View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15617_high_1 (Length: 360)

Name: NF15617_high_1
Description: NF15617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15617_high_1
NF15617_high_1
[»] chr5 (4 HSPs)
chr5 (8-341)||(36848014-36848347)
chr5 (8-341)||(6162397-6162738)
chr5 (15-221)||(36859535-36859748)
chr5 (8-66)||(6163421-6163479)
[»] chr3 (3 HSPs)
chr3 (8-341)||(46521796-46522144)
chr3 (180-341)||(49881548-49881709)
chr3 (8-152)||(49881399-49881543)
[»] chr1 (1 HSPs)
chr1 (8-341)||(18135371-18135709)
[»] chr6 (9 HSPs)
chr6 (142-329)||(6774595-6774783)
chr6 (142-329)||(6679503-6679691)
chr6 (177-316)||(6668545-6668684)
chr6 (8-80)||(6679412-6679484)
chr6 (177-316)||(6779831-6779970)
chr6 (8-80)||(6774802-6774874)
chr6 (9-67)||(6780040-6780098)
chr6 (9-67)||(6668417-6668475)
chr6 (297-341)||(6765843-6765887)
[»] scaffold0299 (1 HSPs)
scaffold0299 (237-281)||(13409-13453)


Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 36848347 - 36848014
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatcaatgaataaataaatacacctctaattg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36848347 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatcaatgaataaataaatatacctctaattg 36848248  T
Q  108 tttcttctgaactaaatgtatcttgatgtctactctaatatgtctcagaggatttaatagaagttcccttggtttcaggttatacttctgtttcagaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36848247 tttcttctgaactaaatgtatcttgatgtctactctaatatgtctcagaggatttaataaaagttcccttggtttcaggttatacttctgtttcagaaaa 36848148  T
Q  208 ttgaaggagcagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcagcaatcccaatcagcattgtgtatacatttcatatcttga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36848147 ttgaaggagcagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcagcaatcccaatcagcattgtgtatacatttcatatcttga 36848048  T
Q  308 ttccgtcaagtattttaggcctgaaagaaggaca 341  Q
    ||||||||||||||||||||||||||||||||||    
T  36848047 ttccgtcaagtattttaggcctgaaagaaggaca 36848014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 6162738 - 6162397
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatcaatgaataaataaatacacctctaattg 107  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| ||  | |||||    
T  6162738 tggacatcatcccataagagaattaccctgctgaattctcttatagatcaagagtaagttcagtggtttatcaatgaataaatagatatacaaccaattg 6162639  T
Q  108 tttcttctgaactaaatgtatcttgatgtctactctaatatgtct--------cagaggatttaatagaagttcccttggtttcaggttatacttctgtt 199  Q
     |||||||||||||||||| ||||||||| || ||||| ||||||        ||||  ||||||||||||||| || ||||||||||||| ||||||||    
T  6162638 cttcttctgaactaaatgtctcttgatgtatagtctaacatgtctgtattattcagaaaatttaatagaagttctctcggtttcaggttattcttctgtt 6162539  T
Q  200 tcagaaaattgaaggagcagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcagcaatcccaatcagcattgtgtatacatttca 299  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| ||| ||| |||    
T  6162538 tcagcagattgaaggagcagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcggcaatcccaatcaacgttgtctatgcatatca 6162439  T
Q  300 tatcttgattccgtcaagtattttaggcctgaaagaaggaca 341  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  6162438 tatcttgattctgtcaagtattttaggcctgaaagaaggaca 6162397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 36859748 - 36859535
Alignment:
Q  15 catcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatcaatgaataaataaatacacctcta-attgtttctt 113  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||   |||||||| |||||||||||| ||| ||| ||||||||||    
T  36859748 catcccggaggagaattaccctactgaattatcttatagatcaagagtaagttcaatatattatcaattaataaataaatataccactatattgtttctt 36859649  T
Q  114 ctgaactaaatgtatcttgatgtctac------tctaatatgtctcagaggatttaatagaagttcccttggtttcaggttatacttctgtttcagaaaa 207  Q
    |||||||||||||||||||||||||||      ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  36859648 ctgaactaaatgtatcttgatgtctactctaaatctaatatgtctcggaggatttaatagaagttcccttggtttcatgttatacttctgtttcagaaat 36859549  T
Q  208 ttgaaggagcagat 221  Q
    ||||||||| ||||    
T  36859548 ttgaaggagtagat 36859535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 6163479 - 6163421
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagt 66  Q
    ||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||||    
T  6163479 tggacattattccagatgagaattaccctgctgaattctcttatagatcaagagtaagt 6163421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 46521796 - 46522144
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatcaatgaataaataaatacacctcta---- 103  Q
    |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |||||||| |||||||||||| |||  ||        
T  46521796 tggatatcattccagaggagaattaccctgctgaattctcttatagatcaagagtaagttcagtggattatcaataaataaataaatataccattaccac 46521895  T
Q  104 --attgtttcttctgaactaaatgtatcttgatgtctactctaatatgtctc---------agaggatttaatagaagttcccttggtttcaggttatac 192  Q
      |||| |||||||||||||||||| ||||||||| || ||||||||||||          ||| |||||||||||||||  |||||||||||||||| |    
T  46521896 ctattgcttcttctgaactaaatgtctcttgatgtttattctaatatgtctggattattcaagaagatttaatagaagtttgcttggtttcaggttattc 46521995  T
Q  193 ttctgtttcagaaaattgaaggagcagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcagcaatcccaatcagcattgtgtata 292  Q
    ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||| |||||||||    
T  46521996 ttctgtttcagcagattgaaggagcagatatatgcatttttggaatgtatgtccaggagtttggctctgaatgcggaaatccgaatcagcgttgtgtata 46522095  T
Q  293 catttcatatcttgattccgtcaagtattttaggcctgaaagaaggaca 341  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  46522096 catttcatatcttgattctgtcaagtattttatgcctgaaagaaggaca 46522144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 180 - 341
Target Start/End: Original strand, 49881548 - 49881709
Alignment:
Q  180 tttcaggttatacttctgtttcagaaaattgaaggagcagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcagcaatcccaatc 279  Q
    ||||||||||| |||||||||||| | |||||||||| |||| ||||||||||||||||||| | |||||| || ||||| |||||| ||||||| ||||    
T  49881548 tttcaggttattcttctgtttcagcagattgaaggagtagatatatgcatttttggaatgtacgcccaggagttcggctccgaatgcggcaatccaaatc 49881647  T
Q  280 agcattgtgtatacatttcatatcttgattccgtcaagtattttaggcctgaaagaaggaca 341  Q
    ||| ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  49881648 agcgttgtgtacacatttcatatcttgattctgtcaagtattttaggcctgagagaaggaca 49881709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 49881399 - 49881543
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatcaatgaataaataaatacacctctaattg 107  Q
    |||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||| || |||||||| | |||||||||||||| ||| | |||||    
T  49881399 tggacatcattccagaggaaaattaccctgccgaattctcttatagatcaagagtaagttcagtggtttattattgaataaataaatataccacaaattg 49881498  T
Q  108 tttcttctgaactaaatgtatcttgatgtctactctaatatgtct 152  Q
      ||||| ||||||||| | ||||||||||||||||| |||||||    
T  49881499 catcttcagaactaaatttctcttgatgtctactctattatgtct 49881543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 18135371 - 18135709
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaa-tggtttatcaatgaataaataaatacacctctaatt 106  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||| |||||||| ||   | ||| ||||||||||||||||| |    || | ||||    
T  18135371 tggacatcatccctcaggagaattaccctgctgaattctcttatagagcaagagtatgttttagtggcttatcaatgaataaatata----ccaccaatt 18135466  T
Q  107 gtttcttctgaactaaatgtatcttgatgtctactctaatatgtct--------cagaggatttaatagaagttcccttggtttcaggttatacttctgt 198  Q
      |||||||||||||||||| | ||||||||||| | ||||||| |        |||| ||||||||| ||||||||||||||||||||||| |||||||    
T  18135467 ccttcttctgaactaaatgtctattgatgtctaccccaatatgtatgtattatacagaagatttaatataagttcccttggtttcaggttattcttctgt 18135566  T
Q  199 ttcagaaaattgaaggagcagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcagcaatcccaatcagcattgtgtatacatttc 298  Q
    ||||| | ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||    
T  18135567 ttcagcatattgaaggagcagatatatgcatttttggaatgtacgtccaggaatttggctctgaatgcggcaaccccaatcagcgttgtgtctacatttc 18135666  T
Q  299 atatcttgattccgtcaagtattttaggcctgaaagaaggaca 341  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  18135667 atatcttgattccttcaagtattttagacctgaaagaaggaca 18135709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 142 - 329
Target Start/End: Complemental strand, 6774783 - 6774595
Alignment:
Q  142 ctaatatgtctcagaggatttaatagaagttcccttggtttcaggttatacttctgtttcagaaaattgaaggagcagatgtatgcatttttggaatgta 241  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||    
T  6774783 ctaatatgtctcag--gatttaatagaagttcccttggtttcaggttatacttctgtttcaaaagattgaaggagtagatgtatgcatttttggaatgta 6774686  T
Q  242 tgtccaggaatttggctctgaat---gcagcaatcccaatcagcattgtgtatacatttcatatcttgattccgtcaagtattttaggcct 329  Q
    |||||||||||||||||||||||   || ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  6774685 tgtccaggaatttggctctgaatgcggcggcaatcccaatcagcgttgtgtatacatatcatatcttgattccgtcaagtattttaggcct 6774595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 142 - 329
Target Start/End: Original strand, 6679503 - 6679691
Alignment:
Q  142 ctaatatgtctcagaggatttaatagaagttcccttggtttcaggttatacttctgtttcagaaaattgaaggagcagatgtatgcatttttggaatgta 241  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  | |||||||||| ||||||||||||||||||||||||    
T  6679503 ctaatatgtctcag--gatttaatagaagttcccttggtttcaggttatacttctgtttcaatagattgaaggagtagatgtatgcatttttggaatgta 6679600  T
Q  242 tgtccaggaatttggctctgaat---gcagcaatcccaatcagcattgtgtatacatttcatatcttgattccgtcaagtattttaggcct 329  Q
    |||||||||||||||||||||||   || ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  6679601 tgtccaggaatttggctctgaatgcggcggcaatcccaatcagcgttgtgtatacatatcatatcttgattccgtcaagtattttaggcct 6679691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 177 - 316
Target Start/End: Original strand, 6668545 - 6668684
Alignment:
Q  177 tggtttcaggttatacttctgtttcagaaaattgaaggagcagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcagcaatccca 276  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||||| | |||||| |||||  |||||||||    
T  6668545 tggttttaggttattcttctatttcagaagattgaaggagcagatgtatgcatatttgcaatgtatgtccaggagtatggctcggaatgtggcaatccca 6668644  T
Q  277 atcagcattgtgtatacatttcatatcttgattccgtcaa 316  Q
    |||| |  || ||||| ||||||||||| ||||| |||||    
T  6668645 atcaacgctgcgtatatatttcatatctcgattctgtcaa 6668684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 6679412 - 6679484
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatca 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||    
T  6679412 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagtggtttatca 6679484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 177 - 316
Target Start/End: Complemental strand, 6779970 - 6779831
Alignment:
Q  177 tggtttcaggttatacttctgtttcagaaaattgaaggagcagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcagcaatccca 276  Q
    |||||| ||||||| ||||| |||||||| ||||||||||| ||||||||||| |||| ||||||||||||||| | ||| || |||||  ||||| |||    
T  6779970 tggttttaggttattcttctatttcagaagattgaaggagcggatgtatgcatatttgcaatgtatgtccaggagtatggatcggaatgtggcaatacca 6779871  T
Q  277 atcagcattgtgtatacatttcatatcttgattccgtcaa 316  Q
    |||| |  |||||||| ||||||||||| ||||| |||||    
T  6779870 atcaacgatgtgtatatatttcatatctcgattctgtcaa 6779831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 6774874 - 6774802
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatca 80  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || ||||||||||    
T  6774874 tggacatcatcccagaggaaaattaccctactgaattctcttatagatcaagagtatgttcagtggtttatca 6774802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 6780098 - 6780040
Alignment:
Q  9 ggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtc 67  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6780098 ggacatcattccagaggagaattaccctgctgaattctcttatagatcaagagtaagtc 6780040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 6668417 - 6668475
Alignment:
Q  9 ggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtc 67  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6668417 ggacatcactccagaggagaattaccctgctgaattctcttatagatcaagagtaagtc 6668475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 6765887 - 6765843
Alignment:
Q  297 tcatatcttgattccgtcaagtattttaggcctgaaagaaggaca 341  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  6765887 tcatatcttgattccgtcaagtattttaggcctgaaaaaaggaca 6765843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 13409 - 13453
Alignment:
Q  237 atgtatgtccaggaatttggctctgaatgcagcaatcccaatcag 281  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  13409 atgtatgtccaggaatttggctcttaatgcggcaatcccaatcag 13453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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