View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15617_high_2 (Length: 236)
Name: NF15617_high_2
Description: NF15617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15617_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 35105804 - 35106016
Alignment:
| Q |
22 |
catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg |
121 |
Q |
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||||||||||| ||||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
35105804 |
catcataaaaaacagggaaaacagtttgtttcaatcttttacggcattcagcaacagtagccatctcttccaaacaccatgttgactcggcatatctttc |
35105903 |
T |
|
| Q |
122 |
agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttacggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
221 |
Q |
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|||||||||||||||||||| | ||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35105904 |
agagaagacaacaatagaaacccgagaattttgaattgcttgaagaagttgcggcgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
35106003 |
T |
|
| Q |
222 |
aaaataccctttc |
234 |
Q |
| |
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||||||||||||| |
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| T |
35106004 |
aaaataccctttc |
35106016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 232
Target Start/End: Original strand, 35183753 - 35183963
Alignment:
| Q |
22 |
catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg |
121 |
Q |
| |
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||||||||||| |||||||||||| |||||||||| | ||| ||||||||||||| ||||||||||||||||| | ||||| || ||||| ||| |
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| T |
35183753 |
catcataaaaaatagggaaaacagtctgtttcaattctgtatgatattcagcaatagtggccatctcttccaaacataatgttgactccgcataattttt |
35183852 |
T |
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| Q |
122 |
agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttacggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
221 |
Q |
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| T |
35183853 |
agagaagacaacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcg |
35183952 |
T |
|
| Q |
222 |
aaaataccctt |
232 |
Q |
| |
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||||||||||| |
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| T |
35183953 |
aaaataccctt |
35183963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 35054891 - 35055103
Alignment:
| Q |
22 |
catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg |
121 |
Q |
| |
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||||||||||| ||||||||| |||||||| || | ||| || |||||||| | ||||||||||||||||||||| ||||| ||||||||| ||| |
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| T |
35054891 |
catcataaaaaatagggaaaactgtttgtttgaaatactcacaacaatcagcaattgcagccatctcttccaaacaccaagttgattcggcatatgtttt |
35054990 |
T |
|
| Q |
122 |
agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttacggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
221 |
Q |
| |
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|||||||||||||||| |||||| ||| || |||||||||||||||| | |||||||| |||||||||||||||| |||| ||||||||||||||| |
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| T |
35054991 |
agagaagacaacaataaaaattcgcgaatttcgaattgcttgtagaagctgcggtgaaataaattctcctttctcaagacttttgtcatccttgaaggca |
35055090 |
T |
|
| Q |
222 |
aaaataccctttc |
234 |
Q |
| |
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|||||||| |||| |
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|
| T |
35055091 |
aaaataccttttc |
35055103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 35177756 - 35177967
Alignment:
| Q |
23 |
atcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttga |
122 |
Q |
| |
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|||||||||| ||||||||||||||||| || || | | |||||| ||||||||||||| |||||||||||||| ||||| || |||||||||| |
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| T |
35177756 |
atcataaaaaacagggaaaacagtttgtaagaaattgctacgacattcaacaatagtagccatttcttccaaacaccatgttgactcagcatatctttct |
35177855 |
T |
|
| Q |
123 |
gagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttacggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaa |
222 |
Q |
| |
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||||||||||| ||||| || | |||| || |||||||||| |||||| | | |||||| ||||||||||||| ||||||| |||||||||||| |||| |
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| T |
35177856 |
gagaagacaacgatagatatccgtgaatttgcaattgcttgtcgaagttgcagcgaaaggcattctcctttctcgagccttttatcatccttgaacgcaa |
35177955 |
T |
|
| Q |
223 |
aaataccctttc |
234 |
Q |
| |
|
||||||| |||| |
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|
| T |
35177956 |
aaataccttttc |
35177967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 35169510 - 35169676
Alignment:
| Q |
68 |
ttcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtaga |
167 |
Q |
| |
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|||| |||| |||||||| |||||||||||||| ||||| || |||||||||| |||||||||||||||||||| | |||| || |||||||||| || |
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| T |
35169510 |
ttcaacaatggtagccatttcttccaaacaccatgttgactcagcatatctttctgagaagacaacaatagaaatccgtgaatttgtaattgcttgtcga |
35169609 |
T |
|
| Q |
168 |
agttacggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttc |
234 |
Q |
| |
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||| || ||||| | ||||||||||||| ||||||| ||||||||||||||| |||| |||||||| |
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| T |
35169610 |
tgttgcgttgaaaagcattctcctttctctagccttttatcatccttgaaggcgaaaacaccctttc |
35169676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 25484514 - 25484393
Alignment:
| Q |
74 |
aatagtagccatctcttccaaacaccacgttgaatcggcata-tctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtagaagtta |
172 |
Q |
| |
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||||| |||||| || ||||||||||| |||||| ||||| |||||| ||||| ||||| |||||||| | ||| |||||||||||||||||||| |
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| T |
25484514 |
aatagcagccatttcatccaaacaccatgttgaagaagcataatctttg-gagaaaacaacgatagaaatgcgtgactgttgaattgcttgtagaagttg |
25484416 |
T |
|
| Q |
173 |
cggtgaaagggattctcctttct |
195 |
Q |
| |
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||||||| || ||||||||||| |
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|
| T |
25484415 |
gggtgaaatggcttctcctttct |
25484393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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