View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15617_low_2 (Length: 296)
Name: NF15617_low_2
Description: NF15617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15617_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 48932450 - 48932155
Alignment:
| Q |
1 |
tcatcaacatagaggttcaaaaatccaagatcttcaacgacccagtaacgcaattagtttcaaaatccaaactttaaccaaacccacttctcaaaatcta |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48932450 |
tcatcaacatagagtttcaaaaatccaagatcttcaacgacccagtaacgcaattagtttcaaaatccaaactttaaccaaacccacttctcaaaatcta |
48932351 |
T |
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| Q |
101 |
aactttcatatgcccacgtagtgaaatcagttatgggagctgnnnnnnnntggcttttcacgctattcagtgcagcagttttatctctaatgcttttgtt |
200 |
Q |
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| T |
48932350 |
aactttcatatgcccacgtagtgaaatcagttatgggagctgaaaaaaaatggcttttcacgctattcagtgcagcagttttatctctaatgcttttgtt |
48932251 |
T |
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| Q |
201 |
aatgtcttctttttcaactttcagttctcaaaagccttttccatcttttgttcaacatggttctcattaccctcctgcttttgcatacttcatctc |
296 |
Q |
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| T |
48932250 |
aatgtcttctttttcaactttcagttctcaaaagccttttccatcttttgttcaacatggttctcattaccctcctgcttttgcatacttcatctc |
48932155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 9392214 - 9392501
Alignment:
| Q |
1 |
tcatcaacatagaggttcaaaaatccaagatcttcaacgacccagtaacgcaattagtttcaaaatccaaactttaaccaaacccacttctcaaaatcta |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9392214 |
tcatcaacatagagtttcaaaaatccaagatcttcaatgacccattaacacaaatagtttcaaaatccaaactttaaccaa-cccacttctcaaaatcgt |
9392312 |
T |
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| Q |
101 |
aactttcatatgcccacgtagtgaaatcagttatgggagctgnnnnnnnntggcttttcacgctattcagtgcagcagttttatctctaatgcttttgtt |
200 |
Q |
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|||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9392313 |
tgatttcatatgcccacatagtgaaattagttatgggagctgaaaaaaa-tggcttttcacgctattcagtgtagcagttttatctctaatgcttttgtt |
9392411 |
T |
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| Q |
201 |
aatgtcttctttttcaactttcagttctcaaaagccttttccatcttttgttcaacatggttctcattaccctcctgcttttgcatactt |
290 |
Q |
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| T |
9392412 |
aatgtcttctttttcaactttcagttctcaaaagccttttccatctcttgttcaacatggttctcattaccctctggcttttgcatactt |
9392501 |
T |
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