View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15618_high_2 (Length: 349)

Name: NF15618_high_2
Description: NF15618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15618_high_2
NF15618_high_2
[»] chr1 (2 HSPs)
chr1 (15-180)||(33777482-33777647)
chr1 (237-304)||(10752192-10752259)
[»] chr6 (2 HSPs)
chr6 (89-211)||(18359730-18359853)
chr6 (224-314)||(18359116-18359206)
[»] chr8 (1 HSPs)
chr8 (224-314)||(2992731-2992821)


Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 33777647 - 33777482
Alignment:
Q  15 ccatttggaaaatgttttgcaagtagagatattagttcttcaagaaatggagcagatgttccttccattgatgtagtgttgcagaatgataatgtgcttt 114  Q
    |||||||||| |||||||||||||  |  |||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||||| |||||| |||    
T  33777647 ccatttggaacatgttttgcaagtcaaagtattagttcttcaagaatgggaccagatgttccttccattgatctagtgttgcagaatgagaatgtggttt 33777548  T
Q  115 gaaatattattggggctaatgcaatggttcgtattaatgataaggatgtgatttgtttgggatttg 180  Q
    | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33777547 ggaatattattggagctaatgcaatggttcgtattaatgataaggatgtgatttgtttgggttttg 33777482  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 10752192 - 10752259
Alignment:
Q  237 attagaactagaattgtcaaacaagctccaagctcttcagcctcttaattatagtcctctattgaaaa 304  Q
    |||||| |||||||||||||| ||||||||| ||||| ||| ||||||| |||| |||| | ||||||    
T  10752192 attagagctagaattgtcaaataagctccaaactcttaagcatcttaatcatagacctcaactgaaaa 10752259  T

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Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 18359853 - 18359730
Alignment:
Q  89 agtgttgcagaatgataatgtgctttgaaatattattggggctaatgcaatggttcgtattaatgataaggatgtgatttgtttgggatttga-tttgca 187  Q
    ||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||| ||||||    
T  18359853 agtgttgcagaatgggaatgtgttttggaatattattggggctaatgcaatggttcgtattaacgataaggttttgatttgtttgggatttgattttgca 18359754  T
Q  188 aaagcatttcaagttgattttacc 211  Q
    ||||||||||||||||||||||||    
T  18359753 aaagcatttcaagttgattttacc 18359730  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 18359206 - 18359116
Alignment:
Q  224 caactatccaccaattagaactagaattgtcaaacaagctccaagctcttcagcctcttaattatagtcctctattgaaaaaactattttc 314  Q
    |||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||    
T  18359206 caactatccatcaattagaactagaattgtcaaataagctccaaactcttgagcctcttaattatagtcctctattgaaaaaacttttttc 18359116  T

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Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 2992821 - 2992731
Alignment:
Q  224 caactatccaccaattagaactagaattgtcaaacaagctccaagctcttcagcctcttaattatagtcctctattgaaaaaactattttc 314  Q
    |||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||    
T  2992821 caactatccagcaattagaactagaattgtcaaataagctccaaactcttgagcctcttaattatagtcctctattgaaaaaacttttttc 2992731  T

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