View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15618_low_1 (Length: 521)
Name: NF15618_low_1
Description: NF15618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15618_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 291 - 503
Target Start/End: Original strand, 41747900 - 41748112
Alignment:
| Q |
291 |
tccggcgactcaacggcggccggtgatttgcaccgggaagaaatatcgtggagtgagacaaagaccttggggaaaatgggcggcggagataagagacccc |
390 |
Q |
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| T |
41747900 |
tccggcgactcaacggcggccggtgatttacaccgggaagaaatatcgtggagtgagacagagaccttggggaaaatgggcggcggagataagagacccc |
41747999 |
T |
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| Q |
391 |
aaactcaaatttcgacggtggttgggaacttacaacactgctgaagaagctgctatggagtatgataaagccgccattgaaatacgtggtgcagacgcgc |
490 |
Q |
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| T |
41748000 |
aaactcaaatttcgacggtggttgggaacttacaacactgctgaagaagctgctatggagtatgataaagccgccattgaaatacgtggtgcagacgcgc |
41748099 |
T |
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| Q |
491 |
ttacgaatttcat |
503 |
Q |
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| T |
41748100 |
ttacgaatttcat |
41748112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 41747625 - 41747841
Alignment:
| Q |
16 |
atgcctaaacaaccttctacacctcctcctattcctaacatcatcaaacacactcatcacttcacacaaatcaacaacatcatgccaaaaactatacaaa |
115 |
Q |
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| T |
41747625 |
atgcccaaacaaccttctacacctcctcccattcccaacatcatcaaacacactcatcacttcacacaaatcaacaacatcatgccaaaaactatacaaa |
41747724 |
T |
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| Q |
116 |
tacgttacaccgaccctgacgccacggattcttcttctgacgaagaagaaaatccaacacattccaattttacccctcgctgcagaatcaaaactttcat |
215 |
Q |
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| T |
41747725 |
tacgttacaccgaccctgacgccacggattcttcttctgacgaagaagaaaatccaatacattccaatattacccctcgccgcagaatcaaaactttcat |
41747824 |
T |
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| Q |
216 |
ccacgacattgtgatcg |
232 |
Q |
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| T |
41747825 |
ccacgacattgtgatcg |
41747841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 441
Target Start/End: Original strand, 8584973 - 8585005
Alignment:
| Q |
409 |
tggttgggaacttacaacactgctgaagaagct |
441 |
Q |
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| T |
8584973 |
tggttgggaacttacaacagtgctgaagaagct |
8585005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 2361369 - 2361307
Alignment:
| Q |
327 |
gaagaaatatcgtggagtgagacaaagaccttggggaaaatgggcggcggagataagagaccc |
389 |
Q |
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| T |
2361369 |
gaagaaataccgtggagtgaggcagagaccatggggaaaatgggcggcggagataagagaccc |
2361307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 386
Target Start/End: Original strand, 13409881 - 13409927
Alignment:
| Q |
340 |
ggagtgagacaaagaccttggggaaaatgggcggcggagataagaga |
386 |
Q |
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| T |
13409881 |
ggagtgagacaaagaccatggggaaaatgggcagcagaaataagaga |
13409927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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