View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15618_low_10 (Length: 248)
Name: NF15618_low_10
Description: NF15618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15618_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 43506626 - 43506413
Alignment:
| Q |
18 |
aaagagaaactaaatgtagagaaaatgttgagaatgagaagcgtggttataaagagcttttgcaaaaagatgagatgcatgaagcttatgagaagctact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43506626 |
aaagagaaactaaatgtagagaaaatgttgagaatgagaagcgtggttataaagagcttttgcaaaaagatgagatgcatgaagcttatgagaagctact |
43506527 |
T |
|
| Q |
118 |
taaggatgcggagattaggcttgtgaagatttatgagaatgatggtggagatggtaatgatgataatgacgtggttgaagataaggaatgtgaagaacgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43506526 |
taaggatgcggagattaggcttgtgaagatttatgagaatgatggtggagatggtaatgatgataatgacgtggttgaagataaggaatgtgaagaacgt |
43506427 |
T |
|
| Q |
218 |
gttatgaggatatt |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
43506426 |
gttatgaggatatt |
43506413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University