View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15618_low_5 (Length: 318)
Name: NF15618_low_5
Description: NF15618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15618_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 2794178 - 2793887
Alignment:
| Q |
8 |
atcaacatccttctcatcatcatcttcattctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctcaacatcctcaaactccagaaaa |
107 |
Q |
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| T |
2794178 |
atcaacatccttctcatcatcatcttcattctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctccacatcctcaaactccagaaaa |
2794079 |
T |
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| Q |
108 |
tcagttataacctttccaatcgaaacaaggtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcaccaatagagt |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2794078 |
tcagttataagctttccaatcgaaacaaggtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcaccaacagagt |
2793979 |
T |
|
| Q |
208 |
cgtttttcagaatggaaagaatctcatcagcagcacctctgataatcccaagcggctgaccaccaaaccgctgctggattacactcaacatc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2793978 |
cgtttttcagaatggaaagaatctcatcagcagcacctctgataatcccaagcggctgaccaccaaaccgctgctggattacactcaacatc |
2793887 |
T |
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