View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15618_low_7 (Length: 309)
Name: NF15618_low_7
Description: NF15618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15618_low_7 |
 | |
|
| [»] scaffold0072 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 294
Target Start/End: Complemental strand, 112088 - 111799
Alignment:
| Q |
5 |
atggacatcatcactcaaccttttctagtgcactttgacccaactgttgtccaccannnnnnnnatcaagctgtcattgtgtcatgtaaagtgttgtgtg |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
112088 |
atggacataatcactcaaccttttctagtgcactttgacccaactgttgtccaccattttttttatcaagctgtcactgtgtcatgtaaagtgttgtgtg |
111989 |
T |
|
| Q |
105 |
cttgacaatgaaaccatgtactttattgtcttgccaactatttagaatcactttgtaaatataaaagtgtaggtatacttttaaattgtttttgggttgt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
111988 |
cttgacaatgaaaccatgtactttattgtcttgccaactatttagaatcactttgtaaatataaaagtgtacgtatacttttaaattgtttttgggttgt |
111889 |
T |
|
| Q |
205 |
gaaattcaaagtaatatacttttcaattgtgttgattgcattctaatgcatttaccatttgttttaatatcataaccttacctgatattt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
111888 |
gaaattcaaagtaatatacttttcaattgtattgattgcattctgatgcatttaccatttgttttaatatcataaccttacctgatattt |
111799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 262
Target Start/End: Original strand, 236425 - 236612
Alignment:
| Q |
76 |
tgtcattgtgtcatgtaaagtgttgtgtgcttgacaatgaaaccatgtactttattgtcttgccaactatttagaatcact------ttgtaaatataaa |
169 |
Q |
| |
|
||||||||| |||| |||| |||| |||| |||| |||||||||||||||||||||||||| |||||| |||| ||| ||| ||||||||||||| |
|
|
| T |
236425 |
tgtcattgtatcatataaaatgttatgtgtttgaaaatgaaaccatgtactttattgtcttcccaactgtttaaaatgactttcatattgtaaatataaa |
236524 |
T |
|
| Q |
170 |
agtgtaggtatacttttaaattgtttttgggttgtgaaattcaaagtaatatacttttcaattgtgttgattgcattctaatgcatttaccat |
262 |
Q |
| |
|
| | ||| ||||||| |||||||| | |||| ||| | || |||||||| |||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
236525 |
a---ttggtgtacttttgaattgtttccagattgtaaaaataaaggtaatatattttttaattgtgtt--cttcattctaatgcatttaccat |
236612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 262
Target Start/End: Original strand, 750048 - 750235
Alignment:
| Q |
76 |
tgtcattgtgtcatgtaaagtgttgtgtgcttgacaatgaaaccatgtactttattgtcttgccaactatttagaatcact------ttgtaaatataaa |
169 |
Q |
| |
|
||||||||| |||| |||| |||| |||| |||| |||||||||||||||||||||||||| |||||| |||| ||| ||| ||||||||||||| |
|
|
| T |
750048 |
tgtcattgtatcatataaaatgttatgtgtttgaaaatgaaaccatgtactttattgtcttcccaactgtttaaaatgactttcatattgtaaatataaa |
750147 |
T |
|
| Q |
170 |
agtgtaggtatacttttaaattgtttttgggttgtgaaattcaaagtaatatacttttcaattgtgttgattgcattctaatgcatttaccat |
262 |
Q |
| |
|
| | ||| ||||||| |||||||| | |||| ||| | || |||||||| |||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
750148 |
a---ttggtgtacttttgaattgtttccagattgtaaaaataaaggtaatatattttttaattgtgtt--cttcattctaatgcatttaccat |
750235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 262
Target Start/End: Complemental strand, 801951 - 801764
Alignment:
| Q |
76 |
tgtcattgtgtcatgtaaagtgttgtgtgcttgacaatgaaaccatgtactttattgtcttgccaactatttagaatcact------ttgtaaatataaa |
169 |
Q |
| |
|
||||||||| |||| |||| |||| |||| |||| |||||||||||||||||||||||||| |||||| |||| ||| ||| ||||||||||||| |
|
|
| T |
801951 |
tgtcattgtatcatataaaatgttatgtgtttgaaaatgaaaccatgtactttattgtcttcccaactgtttaaaatgactttcatattgtaaatataaa |
801852 |
T |
|
| Q |
170 |
agtgtaggtatacttttaaattgtttttgggttgtgaaattcaaagtaatatacttttcaattgtgttgattgcattctaatgcatttaccat |
262 |
Q |
| |
|
| | ||| ||||||| |||||||| | |||| ||| | || |||||||| |||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
801851 |
a---ttggtgtacttttgaattgtttccagattgtaaaaataaaggtaatatattttttaattgtgtt--cttcattctaatgcatttaccat |
801764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 262
Target Start/End: Original strand, 806283 - 806470
Alignment:
| Q |
76 |
tgtcattgtgtcatgtaaagtgttgtgtgcttgacaatgaaaccatgtactttattgtcttgccaactatttagaatcact------ttgtaaatataaa |
169 |
Q |
| |
|
||||||||| |||| |||| |||| |||| |||| |||||||||||||||||||||||||| |||||| |||| ||| ||| ||||||||||||| |
|
|
| T |
806283 |
tgtcattgtatcatataaaatgttatgtgtttgaaaatgaaaccatgtactttattgtcttcccaactgtttaaaatgactttcatattgtaaatataaa |
806382 |
T |
|
| Q |
170 |
agtgtaggtatacttttaaattgtttttgggttgtgaaattcaaagtaatatacttttcaattgtgttgattgcattctaatgcatttaccat |
262 |
Q |
| |
|
| | ||| ||||||| |||||||| | |||| ||| | || |||||||| |||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
806383 |
a---ttggtgtacttttgaattgtttccagattgtaaaaataaaggtaatatattttttaattgtgtt--cttcattctaatgcatttaccat |
806470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 37743158 - 37743102
Alignment:
| Q |
101 |
tgtgcttgacaatgaaaccatgtactttattgtcttgccaactatttagaatcacttt |
158 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
37743158 |
tgtgtttgacaatgaaaatatgtactttattgtc-ggccaactatttagaatcccttt |
37743102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 51168983 - 51168901
Alignment:
| Q |
76 |
tgtcattgtgtcatgtaaagtgttgtgtgcttgacaatgaaaccatgtactttattgtcttgccaactatttagaatcacttt |
158 |
Q |
| |
|
||||||||| |||| |||| |||| |||| |||| |||||||| ||| ||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
51168983 |
tgtcattgtatcatataaaatgttatgtgtttgaaaatgaaactatgcactttattgtcttcccaactgtttagaatgacttt |
51168901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 2550 - 2494
Alignment:
| Q |
101 |
tgtgcttgacaatgaaaccatgtactttattgtcttgccaactatttagaatcacttt |
158 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
2550 |
tgtgtttgacaatgaaaacatgtactttattgtc-ggccaactatttagaatcccttt |
2494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 2469 - 2425
Alignment:
| Q |
218 |
atatacttttcaattgtgttgattgcattctaatgcatttaccat |
262 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
2469 |
atatacttttggattgtgttgatttcattctaatgcatttaccat |
2425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University