View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15619_high_1 (Length: 415)
Name: NF15619_high_1
Description: NF15619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15619_high_1 |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 735888 - 736290
Alignment:
| Q |
1 |
agaaaatcttacaccagtttcacagtccaagtccttatgtccaattagaaagagtgcgcgtctatgtaatgagtctcctagtcctcctccagttcaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
735888 |
agaaaatcttacaccagtttcacagtccaagtccttatgtccaattagaaagagtgcgcgtctatgtaatgagtctcctagtcctcctccagttcaagaa |
735987 |
T |
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| Q |
101 |
gatttggtgcaatcttgtattgttgggtggcaaaagactacttattgtccattcaagaattgttcggttttgttggtgaatgatggcgatgatgttgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
735988 |
gatttggtgcaatcttgtattgttgggtggcaaaagactacttattgtccattcaagaattgttcggttttgttggtgaatgatggcgatgatgttgtta |
736087 |
T |
|
| Q |
201 |
ctagcgcggagtgtccttcatgtcataggctattttgtgcgcaatgtatggttccatggcatggaggaatcaactgtgacgaattcaaacaacaaaagaa |
300 |
Q |
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| T |
736088 |
ctagcgcggagtgtccttcatgtcataggctattttgtgcgcaatgtatggttccgtggcatggaggaatcaactgtgacgaattcaaacaacaaaagaa |
736187 |
T |
|
| Q |
301 |
ggggaaagaagcagcagctgccatggagaccgaaactggttctcaacagtcatcaaaatccttttgtggtatatgttttgattttgtaccagagaatgat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
736188 |
ggggaaagaagcagcagctgccatggagaccgaaactggttctcgacagtcatcaaaatccttttgtggtgtatgttttgattttgtaccagagaatgat |
736287 |
T |
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| Q |
401 |
att |
403 |
Q |
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| T |
736288 |
att |
736290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 24976664 - 24976620
Alignment:
| Q |
140 |
acttattgtccattcaagaattgttcggttttgttggtgaatgat |
184 |
Q |
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| T |
24976664 |
acttattgtccatttaagaattgttctgttttgttggttaatgat |
24976620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 24930213 - 24930257
Alignment:
| Q |
140 |
acttattgtccattcaagaattgttcggttttgttggtgaatgat |
184 |
Q |
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| T |
24930213 |
acttattgtgcattcaaggattgttctgttttgctggtgaatgat |
24930257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 1719 - 1675
Alignment:
| Q |
140 |
acttattgtccattcaagaattgttcggttttgttggtgaatgat |
184 |
Q |
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||||||||| |||||||| ||||||| |||||| ||||||||||| |
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| T |
1719 |
acttattgtgcattcaaggattgttctgttttgctggtgaatgat |
1675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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