View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15619_high_3 (Length: 361)
Name: NF15619_high_3
Description: NF15619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15619_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 4075245 - 4074923
Alignment:
| Q |
1 |
tatgttcttcgctgtttttgaatcatttcatttattggttaattgtgacactgtaagacagtcaaatttggttgttacttaccacagttgaa-gtgaaaa |
99 |
Q |
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| T |
4075245 |
tatgtgcttcgctgtttttgaatcatttcatttattggttaattgtgacactgtaagacagtcaaatttggttgttacttaccacagttgaaagtgaaaa |
4075146 |
T |
|
| Q |
100 |
ggtatatggaaataaaatgagatgacaattcttgatgaatcgagaaattttaagttgtggggacaatactcgtatagtttgtaaagtacgagtttatctg |
199 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
4075145 |
agtatatggaaataaaatgagatgacaaatcgtgatgaatcgagaaattttaagttgtggggacaatacacgtatagtttgtaaagcacgagtttatctg |
4075046 |
T |
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| Q |
200 |
acttttaatcgggcaaattgctctaatatctactgagttgggcccactatgttgtgaccagatttgaaattacagataaatcatggccaacctagagttt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4075045 |
acttttaatcgggcaaattgctctaatatctactgaattgggtccactatgttgtgaccagatttgaaattacagataaatcatggccaacctagagttt |
4074946 |
T |
|
| Q |
300 |
ggcaaaccaaaggttgtttacaa |
322 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
4074945 |
ggcaaaccaaaggttgtttacaa |
4074923 |
T |
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