View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15619_high_4 (Length: 354)

Name: NF15619_high_4
Description: NF15619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15619_high_4
NF15619_high_4
[»] chr3 (1 HSPs)
chr3 (61-354)||(31541573-31541857)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 61 - 354
Target Start/End: Original strand, 31541573 - 31541857
Alignment:
Q  61 gaaggaatgtaaattgtaattgtaatatgaatagaggtggatcatggaccaatatatatatnnnnnnnnnnnnnnnnngatgatcttaaattaattatta 160  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||    
T  31541573 gaaggaatgtaaattgcaattgtaatatgaatagaggtggatcatggaccaatatatatataaaaaaa----------gatgatcttaaattaattatta 31541662  T
Q  161 acgaggttgaaccc-ttttcaagctactgttcccattagcactattgttaacacttaacagagtataccatcaactattataggctgtaaagagagagca 259  Q
    |||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31541663 acgaggttgaaccccttttcaagccactgttcccattagcattattgttaacacttaacagagtataccatcaactattataggctgtaaagagagaaca 31541762  T
Q  260 acaatataatgcgatcaaagatcacttaatttgattacttttcccatcaaatttttcatgaaaaatctaagagnnnnnnnccatcattcacacgt 354  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  31541763 acaatataatgcgatcaaagatcacttaatttgattgcttttcccatcaaatttttcatgaaaaatctaagagagaaaaaccatcattcacacgt 31541857  T

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