View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15619_high_7 (Length: 304)
Name: NF15619_high_7
Description: NF15619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15619_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 30419915 - 30420201
Alignment:
| Q |
1 |
agcccaacatagaaaaacatgtatcaagctagtgactccattagcaagcaccattggaaaaattatattttgtgtttgtaggaatttaacaaggcaccta |
100 |
Q |
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| T |
30419915 |
agcccaacatagaaaaacatgtatcaagctagtgactccattagcaagcaccattggaaaaattatattttgtgtttgtaggaatttaacaaggcaccta |
30420014 |
T |
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| Q |
101 |
agaagggcattggctgaaaggcttggaattgagtaacgagcaaatagttgagcatgtgctgcaatagttttatcttgacgtaaaattatcaaaatcggtt |
200 |
Q |
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| T |
30420015 |
agaagggcattggctgaaaggcttggaattgagtaacgagcaaatagttgagcttgtgctgcaatagttttgtcttgacgtaaaattatcaaaatcggtt |
30420114 |
T |
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| Q |
201 |
ttaagtatgccaaaataaatgataaaggtatactaacaagggtggttgccaacattgctctttgtgtatatattccaaccatatgat |
287 |
Q |
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| T |
30420115 |
ttaagtatgccaaaataaatgataaaggtatactaacaagggtggttgccaacattgctctttgtgtatatattccaaccatatgat |
30420201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 30437423 - 30437707
Alignment:
| Q |
3 |
cccaacatagaaaaacatgtatcaagctagtgactccattagcaagcaccattggaaaaattatattttgtgtttgtaggaatttaacaaggcacctaag |
102 |
Q |
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| T |
30437423 |
cccagcataaaataacatgtattaagctaatgaatccattagcaagcaccataggaaaaacaatgttttgtgtctgtaggaatttaataatgcatcgaag |
30437522 |
T |
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| Q |
103 |
aagggcattggctgaaaggcttggaattgagtaacgagcaaatagttgagcatgtgctgcaatagttttatcttgacgtaaaattatcaaaatcggtttt |
202 |
Q |
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| T |
30437523 |
aagaccattggcagaaagacttggaattgaataacgagcaaatagttgagcttgtgttgcaatagttttgtcttgatgtaaaattatcaaaatgggtttt |
30437622 |
T |
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| Q |
203 |
aagtatgccaaaataaatgataaaggtatactaacaagggtggttgccaacattgctctttgtgtatatattccaaccatatgat |
287 |
Q |
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| T |
30437623 |
aagtatgcccaaataaatgataagggtatactaacaatggtggtagccaacattgccctttgtgtatatattccaaccatatgat |
30437707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 287
Target Start/End: Original strand, 30381124 - 30381407
Alignment:
| Q |
4 |
ccaacatagaaaaacatgtatcaagctagtgactccattagcaagcaccattggaaaaattatattttgtgtttgtaggaatttaacaaggcacctaaga |
103 |
Q |
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||||||||||| ||||||| ||| |||||| ||||||||| | |||||| ||||||| ||| ||||| ||||| | ||||||||||| |||||||||| |
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| T |
30381124 |
ccaacatagaaggacatgtactaaggtagtgattccattagccaacaccatgggaaaaactatgttttgagtttgcaagaatttaacaatgcacctaaga |
30381223 |
T |
|
| Q |
104 |
agggcattggctgaaaggcttggaattgagtaacgagcaaatagttgagcatgtgctgcaatagttttatcttgacgtaaaattatcaaaatcggtttta |
203 |
Q |
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||| ||||||| | |||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||| | |||||| |||| || |
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| T |
30381224 |
aggccattggcagcaaggctaggaattgagtaacgagcaaataattgagcttgtgctgcaatagtttggtcttgatgtaaaatcaccaaaataggttcta |
30381323 |
T |
|
| Q |
204 |
agtatgccaaaataaatgataaaggtatactaacaagggtggttgccaacattgctctttgtgtatatattccaaccatatgat |
287 |
Q |
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| T |
30381324 |
agtatgcccatataattgacaagggtatactaacaagggtggtaaccaacatggctctttgtgtgtatatgccaaccatatgat |
30381407 |
T |
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