View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1561_low_4 (Length: 321)
Name: NF1561_low_4
Description: NF1561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1561_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 47837295 - 47836995
Alignment:
| Q |
1 |
cctaataattctgtagtaattcatgttcttggatgctaagaaagaaaaccctccactataagtacatatatatcaaccataacacacaaagcattcccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47837295 |
cctaataattctgtagtaattcatgttcttggatgctaagaaagaaaaccctccaccaaaagtacatatatatcaaccataacacacaaagcattcccat |
47837196 |
T |
|
| Q |
101 |
gtatttcaacaagaacaaattaatgagaaagattattcaagtgcatgcatgtcgcatgaatgttatgtgtattataaatttcaatnnnnnnnnnnnntca |
200 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47837195 |
gtatttcaataagaacaaattaatgagaaaaattattcaagtgcatgcatgtcgcatgaatgttatgtgtattataaatttcaat----aaaaaaaatca |
47837100 |
T |
|
| Q |
201 |
cccccttagtaaaagaaaaaacataacccttaatta-nnnnnnnagtgcaataatgaatgattttaatataatcacaatgcagcccccaatgttgatcaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47837099 |
cccccttagtaaaagaaaaaacataacccttaattattatttttagtgcaataacgaatgattttaatataatcacaatgcagcccccaatgttgatcaa |
47837000 |
T |
|
| Q |
300 |
atttg |
304 |
Q |
| |
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||||| |
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| T |
47836999 |
atttg |
47836995 |
T |
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