View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1561_low_5 (Length: 290)
Name: NF1561_low_5
Description: NF1561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1561_low_5 |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 27 - 290
Target Start/End: Original strand, 50385754 - 50386017
Alignment:
| Q |
27 |
ctctttgtctcttgtgtgggacaccttttgatagcatttgatgtgccagagggtctttatgtagcttcagtgattattggattttgttttggtgctcaat |
126 |
Q |
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| T |
50385754 |
ctctttgtctcatgtgttggacaccttctgatagcatttgatgtgccagagggtctctacgtagcttcagtgattattggattttgttttggtgctcaat |
50385853 |
T |
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| Q |
127 |
ggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataattttggaagtgtagcaagtccacttggattatatgt |
226 |
Q |
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| T |
50385854 |
ggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataattttggaagtgtagcaagtccccttggattatatgt |
50385953 |
T |
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| Q |
227 |
gcttaatgtgaagatcgctggtcatttgtatgacaaagaagcaaagaagcaattggaagcactt |
290 |
Q |
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| T |
50385954 |
gcttaatgtgaagatcgctggtcatttgtatgacaaagaagcaaagaagcaattggaagcactt |
50386017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 27 - 290
Target Start/End: Original strand, 50394173 - 50394436
Alignment:
| Q |
27 |
ctctttgtctcttgtgtgggacaccttttgatagcatttgatgtgccagagggtctttatgtagcttcagtgattattggattttgttttggtgctcaat |
126 |
Q |
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| T |
50394173 |
ctctttgtctcatgtgttggacaccttctgatagcatttgatgtgccagagggtctctacgtagcttcagtgattattggattttgttttggtgctcaat |
50394272 |
T |
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| Q |
127 |
ggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataattttggaagtgtagcaagtccacttggattatatgt |
226 |
Q |
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| T |
50394273 |
ggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataattttggaagtgtagcaagtccacttggattatatgt |
50394372 |
T |
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| Q |
227 |
gcttaatgtgaagatcgctggtcatttgtatgacaaagaagcaaagaagcaattggaagcactt |
290 |
Q |
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| T |
50394373 |
gcttaatgtgaagatcactggtcatttgtatgacaaagaggctaagaaacaattggaagcactt |
50394436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 290
Target Start/End: Original strand, 50390894 - 50391162
Alignment:
| Q |
22 |
tgactctctttgtctcttgtgtgggacaccttttgatagcatttgatgtgccagagggtctttatgtagcttcagtgattattggattttgttttggtgc |
121 |
Q |
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| T |
50390894 |
tgactctctttgtctcttgtgtgggacaccttttgatagcatttgatgtgccacagggtctctatgtagcttcagttattatcggattttgttttggtgc |
50390993 |
T |
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| Q |
122 |
tcaatggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataattttggaagtgtagcaagtccacttggatta |
221 |
Q |
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| T |
50390994 |
tcaatggccgttactttttgccattatatcagaactctttggacttaaatattatgcaactttgtataattttggaagtataacaagtccaattggctta |
50391093 |
T |
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| Q |
222 |
tatgtgcttaatgtgaagatcgctggtcatttgtatgacaaagaagcaaagaagcaattggaagcactt |
290 |
Q |
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| T |
50391094 |
tatgtgcttaatgtggcgatcactggtcatttgtatgacaaagaagctgagaaacaattggaagcactt |
50391162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 281
Target Start/End: Original strand, 50407846 - 50408037
Alignment:
| Q |
90 |
gcttcagtgattattggattttgttttggtgctcaatggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgtata |
189 |
Q |
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| T |
50407846 |
gcttcagtaatcattggattttgttttggtgcacaatggccattggtttttgccataatttcggagttgtttgggttgaaatattattcaactttgatga |
50407945 |
T |
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| Q |
190 |
attttggaagtgtagcaagtccacttggattatatgtgcttaatgtgaagatcgctggtcatttgtatgacaaagaagcaaagaagcaattg |
281 |
Q |
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| T |
50407946 |
actttggtggggtagctagtccaattggattatattttcttaatgttagggtcgctggtcatttatatgacaaagaagctaagaggcaattg |
50408037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 196
Target Start/End: Complemental strand, 19712805 - 19712643
Alignment:
| Q |
34 |
tctcttgtgtgggacaccttttgatagcatttgatgtgccagagggtctttatgtagcttcagtgattattggattttgttttggtgctcaatggccatt |
133 |
Q |
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| T |
19712805 |
tctcttgtttaggtcaccttctaattgcatttaatgtcccaaatggtctttatgtagcatcaattattattggtttctgctttggtgcaaattggccagt |
19712706 |
T |
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| Q |
134 |
actttttgccattatatcagaactttttggacttaaatattatgcaactttgtataattttgg |
196 |
Q |
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| T |
19712705 |
actattttcaatcatatctgaactctttggtcttaaatattactcaacattgtacaatgttgg |
19712643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 41334950 - 41335065
Alignment:
| Q |
96 |
gtgattattggattttgttttggtgctcaatggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgtataattttg |
195 |
Q |
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| T |
41334950 |
gtgattattggtttttgttttggagctcaatggccattgatgtttgcaatcatatccgaaatttttggattgaaatactattcaactttgtacaattttg |
41335049 |
T |
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| Q |
196 |
gaagtgtagcaagtcc |
211 |
Q |
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| T |
41335050 |
gagctgtggcaagtcc |
41335065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 34297297 - 34297368
Alignment:
| Q |
219 |
ttatatgtgcttaatgtgaagatcgctggtcatttgtatgacaaagaagcaaagaagcaattggaagcactt |
290 |
Q |
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| T |
34297297 |
ttatatgtgcttaatgttacaatcactggtcatttgtatgacaaggaagctaataatcaattggaagcactt |
34297368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 268
Target Start/End: Original strand, 3641 - 3735
Alignment:
| Q |
174 |
tatgcaactttgtataattttggaagtgtagcaagtccacttggattatatgtgcttaatgtgaagatcgctggtcatttgtatgacaaagaagc |
268 |
Q |
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| T |
3641 |
tatgcaactttgtacagttttggaagtgtagcaactcaacttgtgttatctgttctgattgtgaagatcaccagtcattggtatcacaaagaagc |
3735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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