View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1561_low_6 (Length: 276)
Name: NF1561_low_6
Description: NF1561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1561_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 39984819 - 39984552
Alignment:
| Q |
1 |
aagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgagg |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||||||| |||| |
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| T |
39984819 |
aagaatgcattggaaaactatgcatacaacatgaggaacaccattaaggatgaaaaaattgcaggaaagcttgattcggatgacaaaaagaagatcgagg |
39984720 |
T |
|
| Q |
101 |
acaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
39984719 |
acaccattgaggctgctatccagtggctagatgccaaccagcttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccc |
39984620 |
T |
|
| Q |
201 |
tatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggcgctgcagcagatgatgatgatg |
268 |
Q |
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| T |
39984619 |
tatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggtgctgctcccggtgatgatgatg |
39984552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8018408 - 8018634
Alignment:
| Q |
1 |
aagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgagg |
100 |
Q |
| |
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|||||||| |||||||| || || ||||||||||||||||||||||| || || ||||||| ||||||| | || ||||| ||||||||||| | |
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| T |
8018408 |
aagaatgctttggaaaactacgcttacaacatgaggaacacaattaaagacgagaagattggttcaaagctttcacctgaggacaaaaagaagattgatg |
8018507 |
T |
|
| Q |
101 |
acaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccc |
200 |
Q |
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| T |
8018508 |
atgcaattgacgctgcaattcagtggttggacagtaaccagttggcagaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaaccc |
8018607 |
T |
|
| Q |
201 |
tatcattgccaagatgtaccaaggtgg |
227 |
Q |
| |
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| T |
8018608 |
aatcattgccaagatgtatcaaggtgg |
8018634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 227
Target Start/End: Complemental strand, 8101759 - 8101614
Alignment:
| Q |
82 |
gacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaat |
181 |
Q |
| |
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||||||||| |||||||||| | ||||||| || || || ||||| ||||| ||||||||||| || || ||||||||||| |||||||||||||| |
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| T |
8101759 |
gacaagaagcagattgaggatgcaattgagggagccattcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagc |
8101660 |
T |
|
| Q |
182 |
tggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtgg |
227 |
Q |
| |
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| || | |||| ||||| |||||||| ||||||||||||||||| |
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|
| T |
8101659 |
ttgagacaatctgtaacccaatcattgcaaagatgtaccaaggtgg |
8101614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 24 - 244
Target Start/End: Original strand, 17706694 - 17706911
Alignment:
| Q |
24 |
atacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctatccag |
123 |
Q |
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|||||||| |||| |||| ||||||||||| |||||||||||||||||||||||| | |||||||| | |||||||||||||||||||| |||||| | |
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| T |
17706694 |
atacaacacgagggacaccattaaggatgaaaagattgcaggaaagcttgattccaaagacaagaaaa---ttgaggacaccattgaggctactatccgg |
17706790 |
T |
|
| Q |
124 |
tggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaag |
223 |
Q |
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|||||||| || || |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
17706791 |
tggctagacgccaatcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaaccctatcattgccaagatgtaccaag |
17706890 |
T |
|
| Q |
224 |
gtggtgcaggtcctgacatgg |
244 |
Q |
| |
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||||||| |||| || ||||| |
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| T |
17706891 |
gtggtgctggtcttggcatgg |
17706911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 17649309 - 17649568
Alignment:
| Q |
1 |
aagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgagg |
100 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||| ||||| ||||| ||||||||| |||||||||||||| | |||||||||| |||||| |
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| T |
17649309 |
aagaatgcattggaaaactat----acaacatgaggaacaccattaatgatgaaaagattgcatgaaagcttgattccaaagacaagaaga---ttgagg |
17649401 |
T |
|
| Q |
101 |
acaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccc |
200 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||| | ||||||||||||||||||| |||||||||||| | | ||||| ||||||| |
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| T |
17649402 |
acaccattgaggctgctatccagtggctagaccc-aaccagcttgaataggcagatgagtttgaggataagatgaaggaaccgcgaggtgtcggcaaccc |
17649500 |
T |
|
| Q |
201 |
tatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggcgctgcagcagatgatgatgatg |
268 |
Q |
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| T |
17649501 |
tatcattgccaagatgtaccaaggtggtgcaggtcttgacatggatgccgctccaggtgatgatgatg |
17649568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 23588728 - 23588953
Alignment:
| Q |
1 |
aagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgagg |
100 |
Q |
| |
|
||||||||| | || || ||||| |||||||||||||||||||| || || ||||||||||| ||| | | | ||||| |||||||| ||||| | |
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| T |
23588728 |
aagaatgcacttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtctgctgatgataagaagaaaattgaag |
23588827 |
T |
|
| Q |
101 |
acaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccc |
200 |
Q |
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| | ||||||| ||||| || ||| | |||| || || |||| |||||| ||||| |||||||||||||||||||| |||| | | |||||||| |
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| T |
23588828 |
atgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccc |
23588927 |
T |
|
| Q |
201 |
tatcattgccaagatgtaccaaggtg |
226 |
Q |
| |
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||||||||| | |||||| ||||||| |
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| T |
23588928 |
tatcattgcaaggatgtatcaaggtg |
23588953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 23597721 - 23597805
Alignment:
| Q |
142 |
cttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtg |
226 |
Q |
| |
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|||| |||||| ||||| |||||||||||||||||||| |||| || | ||||||||||||||||| | |||||| ||||||| |
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| T |
23597721 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
23597805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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