View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1562-INSERTION-1 (Length: 311)
Name: NF1562-INSERTION-1
Description: NF1562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1562-INSERTION-1 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 132 - 278
Target Start/End: Original strand, 27844811 - 27844956
Alignment:
| Q |
132 |
ctttttaagtgtcttagaaatatatacctctaataatcatagtgtttagcttgaatcttatgtaagactaggacacataatgtatatacttctttttaat |
231 |
Q |
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| T |
27844811 |
ctttttaagtgtcttagaaatatatacctctaataatcatagtgtttagcttgaatcttatgtaagactaggacacataatgtatatatttctttttaat |
27844910 |
T |
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| Q |
232 |
aagaagcaagnnnnnnnattaaagaggtataaagggtacttgaaacc |
278 |
Q |
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| T |
27844911 |
aagaagcaag-ttttttattaaagaggtataacgggtacttgaaacc |
27844956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 27844702 - 27844735
Alignment:
| Q |
24 |
tgaactcaatttccacctctaataattaatccat |
57 |
Q |
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| T |
27844702 |
tgaactcaatttccacctctaataattaatccat |
27844735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 27846027 - 27846068
Alignment:
| Q |
270 |
cttgaaacccattagaacagtaatacatacatacacctctaa |
311 |
Q |
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| T |
27846027 |
cttgaaacgcattagaacaataatacatacatacacctctaa |
27846068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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