View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15620_high_12 (Length: 363)

Name: NF15620_high_12
Description: NF15620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15620_high_12
NF15620_high_12
[»] chr1 (3 HSPs)
chr1 (96-204)||(13362076-13362186)
chr1 (21-109)||(13362227-13362317)
chr1 (261-299)||(13361981-13362019)
[»] chr4 (3 HSPs)
chr4 (96-204)||(50056571-50056684)
chr4 (29-109)||(50056725-50056805)
chr4 (261-299)||(50056475-50056513)


Alignment Details
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 13362186 - 13362076
Alignment:
Q  96 atttctcaaacatttttattgaaatcatggatccaattccctttggnnnnnnnn--tgagaaacaaaatccagcaaagcagagaatataaatgtttatag 193  Q
    |||| |||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||| |||||||||||||||||||||    
T  13362186 atttttcaaacatttttattgaaatcatggatccaattccctttggaaaaaaaaaatgagaaacaaaatccagcaaagtagagaatataaatgtttatag 13362087  T
Q  194 atctgggtttg 204  Q
    |||||||||||    
T  13362086 atctgggtttg 13362076  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 13362317 - 13362227
Alignment:
Q  21 acatcatcaacaacaataacattcaccgtaacacgaagcttgttcctcaatatccattc--atgcccatgactctaaatttctcaaacatt 109  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||  || |||||||||| ||||||||||||||||    
T  13362317 acatcatcaacaacaataacattcaccataacatgaagcttgttcctcaatatccattcatatacccatgactccaaatttctcaaacatt 13362227  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 13362019 - 13361981
Alignment:
Q  261 ggtttttgttctctttaatgcttatggaattgctttgct 299  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13362019 ggtttttgttctctttaatgcttatggaattgctttgct 13361981  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 50056684 - 50056571
Alignment:
Q  96 atttctcaaacatttttattgaaatcatggatccaattccctttgg-nnnnnnnntgagaaacaaaatccagcaaagcagagaat----ataaatgttta 190  Q
    |||| |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||    ||| |||||||    
T  50056684 atttgtcaaacatttttattgaaatcatggatccaattccctttggaaacaaagatgagaaacaaaatccaggaaagcagagaatatacatacatgttta 50056585  T
Q  191 tagatctgggtttg 204  Q
    ||||||||||||||    
T  50056584 tagatctgggtttg 50056571  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 50056805 - 50056725
Alignment:
Q  29 aacaacaataacattcaccgtaacacgaagcttgttcctcaatatccattcatgcccatgactctaaatttctcaaacatt 109  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||    
T  50056805 aacaacaataacattcaccataacttgaagcctgttcctcaatatccattcatacctatgactccaaatttctcaaacatt 50056725  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 50056513 - 50056475
Alignment:
Q  261 ggtttttgttctctttaatgcttatggaattgctttgct 299  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  50056513 ggtttttattctctttaatgcttatggaattgctttgct 50056475  T

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