View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15620_high_15 (Length: 358)

Name: NF15620_high_15
Description: NF15620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15620_high_15
NF15620_high_15
[»] chr7 (10 HSPs)
chr7 (259-358)||(35073965-35074066)
chr7 (290-358)||(35100732-35100801)
chr7 (311-358)||(35085466-35085513)
chr7 (272-358)||(42795345-42795434)
chr7 (90-127)||(42795614-42795651)
chr7 (151-203)||(42795502-42795554)
chr7 (151-194)||(35085284-35085327)
chr7 (158-201)||(43026940-43026983)
chr7 (290-332)||(43026796-43026838)
chr7 (151-194)||(35100591-35100634)


Alignment Details
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 259 - 358
Target Start/End: Original strand, 35073965 - 35074066
Alignment:
Q  259 gatgaaaatcacatga-ttttacaaacataaataagtatcgcttggagagtagaagagatata-gagatacttgagaaaagcagcttatcgtacctgttt 356  Q
    |||||||||| ||||| ||||||||  || | ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  35073965 gatgaaaatcgcatgaattttacaatgatgattaagtatcgcttggagagtagaagagagataagagatacttgagaaaagcagcttattgtacctgttt 35074064  T
Q  357 ct 358  Q
    ||    
T  35074065 ct 35074066  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 35100732 - 35100801
Alignment:
Q  290 taagtatcgcttggagagtagaagagatata-gagatacttgagaaaagcagcttatcgtacctgtttct 358  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  35100732 taagtatcgcttggagagtagaagagagataagagatacttgagaaaagcagcttatcgtacctgtttct 35100801  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 35085466 - 35085513
Alignment:
Q  311 aagagatatagagatacttgagaaaagcagcttatcgtacctgtttct 358  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  35085466 aagagagatagagatacttgagaaaagcagcttatcgtacctgtttct 35085513  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 272 - 358
Target Start/End: Complemental strand, 42795434 - 42795345
Alignment:
Q  272 tgattttacaaacataaataagtatcgcttggagagtagaagagatatagagatacttg----agaaaagcagcttatcgtacctgtttct 358  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||    || |||| ||||||||| ||||||||||    
T  42795434 tgattttacaa-cataaataagtatcgcttggagagtataagagagatagagataattgataaagtaaagtagcttatcgcacctgtttct 42795345  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 42795651 - 42795614
Alignment:
Q  90 atgacgggatgggcctcccactcataaaaggagcagag 127  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42795651 atgacgggatgggcctcccactcataaaaggagcagag 42795614  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 42795554 - 42795502
Alignment:
Q  151 aatcgaaaccagacaacacttataaacccgcactgaattacccctcaacatcg 203  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||| ||||||    
T  42795554 aatcgaaaccagctaacacttataaacccgcactgagttacccctccacatcg 42795502  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 35085284 - 35085327
Alignment:
Q  151 aatcgaaaccagacaacacttataaacccgcactgaattacccc 194  Q
    |||| ||||||||| |||||||||||||||||||||||||||||    
T  35085284 aatccaaaccagacgacacttataaacccgcactgaattacccc 35085327  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 43026983 - 43026940
Alignment:
Q  158 accagacaacacttataaacccgcactgaattacccctcaacat 201  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||    
T  43026983 accagacgacacttataaacccgcactgaattacccctccacat 43026940  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 43026838 - 43026796
Alignment:
Q  290 taagtatcgcttggagagtagaagagatatagagatacttgag 332  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  43026838 taagtatcgcttggatagtagaagagagatagagatacttgag 43026796  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 35100591 - 35100634
Alignment:
Q  151 aatcgaaaccagacaacacttataaacccgcactgaattacccc 194  Q
    |||| ||||||||| ||||||||||||||||| |||||||||||    
T  35100591 aatccaaaccagacgacacttataaacccgcattgaattacccc 35100634  T

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