View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15620_high_16 (Length: 349)
Name: NF15620_high_16
Description: NF15620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15620_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 62 - 325
Target Start/End: Original strand, 235421 - 235685
Alignment:
| Q |
62 |
tttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaac |
161 |
Q |
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| T |
235421 |
tttatcaaccacataaggctggcctttgaaaacacggatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaac |
235520 |
T |
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| Q |
162 |
actactggttcttctccagtacagttcaatgagccgacaatgataggg-ttttttccatgggacatgacagcgaccacttttttaggattgaagtggctg |
260 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
235521 |
actactggttcttctccagtacagttcaacgagccgacaatgatagggtttttttccatgggacatgacagcgaccactattttaggattgaagtggctg |
235620 |
T |
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| Q |
261 |
acgacatggccatcgagtgaggatggtggtcttattgtttctctgtcttcgggtgtgatgatgtc |
325 |
Q |
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| T |
235621 |
acgacatggccatcgggtgaggacggtggtcttattgtttctctgtcttcgggtgtgatgatgtc |
235685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 219
Target Start/End: Complemental strand, 8814204 - 8814023
Alignment:
| Q |
41 |
aacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaa |
140 |
Q |
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| T |
8814204 |
aacagtaacagtctgtccagttttgtctaccacataacactgacctttgaaagcacggatatctccaaagtagactgacatttcaggaataaacttccaa |
8814105 |
T |
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| Q |
141 |
ttctcatcgccacatttcaacactac---tggttcttctccagtacagttcaatgagccgacaatgatagggttttttccat |
219 |
Q |
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| T |
8814104 |
ttctcatcgccgcatttgaacactaccagttgttcttctcctttacagttaaatgaggcgacgatgataggtttatttccat |
8814023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 251242 - 251114
Alignment:
| Q |
41 |
aacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaa |
140 |
Q |
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||||||||| ||||| ||||| || || ||| ||||||| ||||||||||||||| ||||||||| ||||| |||||||| ||| ||| |||||| |
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| T |
251242 |
aacagtaactgtccgtccagtattgtctaccgcataaggtcggcctttgaaaacacaaatgtctccaaaataagccgacatgttaggtatagccttccaa |
251143 |
T |
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| Q |
141 |
ttctcatcgccacatttcaacactactgg |
169 |
Q |
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| T |
251142 |
ttctcatcaccgcatttgaacactactgg |
251114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 176
Target Start/End: Original strand, 247148 - 247267
Alignment:
| Q |
57 |
ccagttttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatt |
156 |
Q |
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|||||||| || ||| ||||||| ||||||||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||||| || |||| |
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| T |
247148 |
ccagttttgtctaccgcataaggtcggcctttgaaaacacaaatgtctcctaaataaaccgacatgtgaggtatagccttccaattctcatcaccgcatt |
247247 |
T |
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| Q |
157 |
tcaacactactggttcttct |
176 |
Q |
| |
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|||||| | |||||| |||| |
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| T |
247248 |
tcaacaatgctggttgttct |
247267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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