View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15620_high_21 (Length: 317)
Name: NF15620_high_21
Description: NF15620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15620_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 5957979 - 5957666
Alignment:
| Q |
1 |
tcaaacttcaccttcatataactacacccagtccgaaaccccgaatcaaacttcacccctctagtctgcaccttctccttattcatccccaaaacaatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5957979 |
tcaaacttcaccttcatataactacacccagtccgaaaccccgaatcaaacttcacccctctagtctgcaccttctccttattcatccccaaaacaatct |
5957880 |
T |
|
| Q |
101 |
cctccccaaactcatcctccccaactttccccaacaaagccgcccgtccgccaagcctgacatgggccaccgccacattcgacggtggcccaccaggtgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5957879 |
cctccccaaactcatcctccccaactttccccaacaaagccgcccgtccgccaagcctgacatgggccaccgccacattcgacggcggcccaccaggtgc |
5957780 |
T |
|
| Q |
201 |
tcgcgcaaactccggcggcttccattgtaacatcttccattcggtgtatatatctgggtccattggaaactcgtgcacacgcaccgtaggtagaaactcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5957779 |
tcgcgcaaactccggcggcttccattgtaacatcttccattctgtgtatatatctgggtccattggaaactcctgcacacgcaccgtaggtagaaactcc |
5957680 |
T |
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| Q |
301 |
ctctgtgctcctcc |
314 |
Q |
| |
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||||||||| |||| |
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| T |
5957679 |
ctctgtgctgctcc |
5957666 |
T |
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