View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15620_high_3 (Length: 547)
Name: NF15620_high_3
Description: NF15620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15620_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 26 - 391
Target Start/End: Original strand, 46576837 - 46577202
Alignment:
| Q |
26 |
acatcatcagactagaaaaatggaaaggaaaaacnnnnnnnnnnngttacaataaatggatcatgtttatataaaacgattccaaattatgagcataata |
125 |
Q |
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| T |
46576837 |
acatcataagactggaaaaatggaaaggaaaaacatttattttttgttacaataaatggatcatgtccatataaaacgattccaaattatgagcataata |
46576936 |
T |
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| Q |
126 |
ttgagagcattaaaacatataaattcaaaatcacacacatcttacaacacatgacaagtaaaatccaagtgcatggttggattcaattttaagagagcaa |
225 |
Q |
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| T |
46576937 |
ttgagagcatgaaaacatataaattcaaaatcacacacatcttacaacacatgacaagtaaaatccaagtgcatggttggattcaattttaagagaccaa |
46577036 |
T |
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| Q |
226 |
aaagtgattattaagacttgatactggttttagtgtttgatggctccctaatagaatcgtcttttactccataattgattttaggattaaggtaggatat |
325 |
Q |
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| T |
46577037 |
aaagtgattattaagacttgatactggttttagtgttagatggctccgtaatagaatcgtcttttactccataattgattttaggattaaggtaggatat |
46577136 |
T |
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| Q |
326 |
gtagcttttgccttgaaaattttacattaaattcacttttacctaaaatcaattttactaaaccac |
391 |
Q |
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| T |
46577137 |
gtagcttttgccttgaaaattttacattaaattcacttttacctaaaatcaattttactaaaccac |
46577202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 417 - 519
Target Start/End: Original strand, 46577201 - 46577303
Alignment:
| Q |
417 |
acatccaaacacacaataagaaatatacctttgcgtgtgcgcttcagaagctcacaacctcttgcaagtaattctctactatagatagtacccgagaaaa |
516 |
Q |
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| T |
46577201 |
acatccaaacacacaataagaaatatacctttgcgtgtgcgcttcagaagctcacaacctcttgcaagtaattctctactatagatagtacccgagaaaa |
46577300 |
T |
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| Q |
517 |
tat |
519 |
Q |
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| T |
46577301 |
tat |
46577303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 32160096 - 32160044
Alignment:
| Q |
351 |
attaaattcacttttacctaaaatcaattttactaaaccacctaaatcaaaat |
403 |
Q |
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| T |
32160096 |
attaaactcacttttaattaaaatcaattttacaaaactaactaaatcaaaat |
32160044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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