View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15620_high_4 (Length: 415)
Name: NF15620_high_4
Description: NF15620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15620_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 36 - 393
Target Start/End: Complemental strand, 952298 - 951945
Alignment:
| Q |
36 |
tgaaaataaggaggtgcaagtcaatatgaaaattaaataaaagttgttttatgttttcagtttatatatcaannnnnnnaacctttatctctacatattt |
135 |
Q |
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| T |
952298 |
tgaaaataaggaggtgcaggtcaatatgaaaattaaa----agttgttttatgttttcagtttatatatcaatttttttaagctttatctctacatattt |
952203 |
T |
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| Q |
136 |
gtttccttgacttcctaaaatttctttttaagatttatgtatcaagatttgtttcgattaaaattgtttattactgctctagctttattgtgttcgtgat |
235 |
Q |
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| T |
952202 |
gtttccttgacttcctaaaatttctttttaagatttatgtatcaagatttgtttcgattaaaattgtttattactgctctagctttattgtgttcgtgat |
952103 |
T |
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| Q |
236 |
tctcgtatgtcatttgccacannnnnnncaatgtagtttaatttggattgcaatggtttgtctgttttccccgcagttgaaccttgtacgaccaaaaata |
335 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
952102 |
tctcgtatgccatttgccacatttttttcaatgtagtttaatttggattgcaatggtttgtctgttttccccgcagttgaaccttgtacgaccaataata |
952003 |
T |
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| Q |
336 |
aaatctcaaaggatagattgagtgttggacaaatcatgtacaatttagcatgatgatg |
393 |
Q |
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| T |
952002 |
aaatctcaaaggatagattgagtgttggacaaatcatgtacaatttagcatgatgatg |
951945 |
T |
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