View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15620_high_6 (Length: 389)

Name: NF15620_high_6
Description: NF15620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15620_high_6
NF15620_high_6
[»] chr4 (2 HSPs)
chr4 (22-381)||(16988055-16988414)
chr4 (123-218)||(35088802-35088897)
[»] chr2 (3 HSPs)
chr2 (22-381)||(21807540-21807899)
chr2 (70-367)||(20971202-20971497)
chr2 (127-217)||(23682248-23682338)
[»] chr5 (4 HSPs)
chr5 (70-365)||(26465292-26465587)
chr5 (129-325)||(23884074-23884270)
chr5 (61-212)||(23958779-23958930)
chr5 (286-322)||(23958669-23958705)
[»] chr6 (5 HSPs)
chr6 (30-366)||(34068262-34068598)
chr6 (108-233)||(20850027-20850152)
chr6 (111-235)||(14617738-14617862)
chr6 (163-241)||(28561533-28561611)
chr6 (61-302)||(12302377-12302618)
[»] chr7 (5 HSPs)
chr7 (127-227)||(3004921-3005021)
chr7 (136-245)||(8853841-8853950)
chr7 (169-218)||(18477565-18477614)
chr7 (171-235)||(19666209-19666273)
chr7 (133-227)||(19813298-19813392)
[»] chr1 (2 HSPs)
chr1 (127-227)||(37737401-37737501)
chr1 (121-224)||(13427891-13427994)
[»] scaffold0257 (1 HSPs)
scaffold0257 (82-235)||(8273-8426)
[»] chr8 (2 HSPs)
chr8 (133-305)||(18551164-18551336)
chr8 (124-182)||(2998101-2998159)
[»] chr3 (3 HSPs)
chr3 (169-278)||(44667108-44667217)
chr3 (76-299)||(18963220-18963443)
chr3 (22-74)||(4643364-4643416)


Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 22 - 381
Target Start/End: Complemental strand, 16988414 - 16988055
Alignment:
Q  22 acatcatcataaggagaactagaatcagtgtgtaattttcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaa 121  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16988414 acatcatcataaggagaactagaatcagtgtgtaatttgcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcctgtatcagttaaaa 16988315  T
Q  122 gatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatctt 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988314 gatcaagacaatactttctttgacaaagagagattccttgtgaggaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatctt 16988215  T
Q  222 aaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaa 321  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16988214 aaaagaagaatgcataatggctttaatatcttgaaattcagagatagaatttccagctaggatcacatcatcaacatacacaagtaaaactgtgaatgaa 16988115  T
Q  322 gaagcagtcttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988114 gaagcagtcttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 16988055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 35088897 - 35088802
Alignment:
Q  123 atcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgat 218  Q
    |||||| ||||||||||||||||| ||||| || |||  |   |||||||||||||| | |||||| |||||||| |  || ||||||||||||||    
T  35088897 atcaaggcaatactttctttgacagagagaaatgcctgctttggaatgagcaacctcaataccaaggaagtatttgagttgaccaagatccttgat 35088802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 22 - 381
Target Start/End: Original strand, 21807540 - 21807899
Alignment:
Q  22 acatcatcataaggagaactagaatcagtgtgtaattttcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaa 121  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||    
T  21807540 acatcatcataaggagaactagaatcagtgtgtaatttgcaggaagggtcagatggcgtagaaataggtttggaagctaaaaatcatgtattagttaaaa 21807639  T
Q  122 gatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatctt 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807640 gatcaagacaatactttctttgacaaagagagattccttgtgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatctt 21807739  T
Q  222 aaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaa 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  21807740 aaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttccagctaggatcacatcatcaacatacacaagtaaaattgtgaatgaa 21807839  T
Q  322 gaagcagtcttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807840 gaagcagtcttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 21807899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 70 - 367
Target Start/End: Original strand, 20971202 - 20971497
Alignment:
Q  70 tcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaat 169  Q
    ||||||||||||||| ||||||| ||||| | ||| | |||||||||  |  | |||||||| || |||||||| ||||||||||| |  | ||| ||||    
T  20971202 tcagatggtgtagaatcaggttttgaagcaagaaaacatgtatcagtcta--ggtcaagacattattttctttggcaaagagagatgcactgtgatgaat 20971299  T
Q  170 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagataga 269  Q
     ||||||||||| ||||||||| ||||| || || |||||| |||| ||||| || |||||||||||| ||  ||| || || || || ||||| |  ||    
T  20971300 aagcaacctctagaccaagaaaatatttcaattgaccaagagccttaatcttgaaggaagaatgcagattgattttgatgtcctgaaactcagaaagtga 20971399  T
Q  270 atttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattgaa 367  Q
    | | ||  | |  ||||||||||||||||| ||||| ||  |||||||||||| | | |||||||| |||||||||||||||||||| ||||||||||    
T  20971400 agtaccaacaataatcacatcatcaacataaacaagcaaggctgtgaatgaagtatctgtcttcttaatgaagagagagtgatcagatgcagattgaa 20971497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 23682338 - 23682248
Alignment:
Q  127 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttga 217  Q
    |||||||||||||||||||| |  || || |||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||    
T  23682338 agacaatactttctttgacacaatgaaataccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttga 23682248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 70 - 365
Target Start/End: Original strand, 26465292 - 26465587
Alignment:
Q  70 tcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaat 169  Q
    ||||||||||||||| ||||||| | ||| | ||||| | |||||||||  |||||||||||||| |||||||| ||||||||||| |||| ||| ||||    
T  26465292 tcagatggtgtagaagcaggttttgcagcaagaaatcctatatcagttaggagatcaagacaatattttctttggcaaagagagatgccttgtgaggaat 26465391  T
Q  170 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagataga 269  Q
    ||||||| |||||||||||||||||||| || |||||||||||||| || |  |||| |||||||||||||||||| || ||||||||||||||||  ||    
T  26465392 gagcaacttctaaaccaagaaagtatttcaattggccaagatccttaatttctaaagcagaatgcagaatggctttgatgtcttggaattcagagagtga 26465491  T
Q  270 atttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattg 365  Q
    | | || |  | |||||||||||||||||| ||||| ||| |||||||||||| |   |||||||| ||||| ||||| |||||||| | ||||||    
T  26465492 agtaccagtgatgatcacatcatcaacataaacaagcaaagctgtgaatgaagtatatgtcttcttaatgaaaagagaatgatcagatgtagattg 26465587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 129 - 325
Target Start/End: Original strand, 23884074 - 23884270
Alignment:
Q  129 acaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaa 228  Q
    ||||||||||||||| || || |||||||||| |  ||||||||| |||||||||||||| || |||||||| ||||||||||| ||||| || ||||||    
T  23884074 acaatactttctttggcatagtgagattccttgtttagaatgagctacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaagaa 23884173  T
Q  229 gaatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaag 325  Q
       || |||||| |||| || |  || |||||| | |  || |||||||| || || | |||||| ||||||||||| |  | ||||||||||||||    
T  23884174 ttgtgaagaatgtctttgatgttctgaaattcataaagtgagtttcctgcaagaatgatatcatccacatacacaagaagtattgtgaatgaagaag 23884270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 23958930 - 23958779
Alignment:
Q  61 catgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgaca-aagagagattcct 159  Q
    ||||| || ||| |||||||||||| ||||||||| || |  || | ||| ||||| | ||||||||| ||||| ||||||||||| |||| | || |||    
T  23958930 catgatggatcaaatggtgtagaaagaggtttggatgcaaggaaacatgtgtcagtcagaagatcaaggcaatattttctttgacataagaaa-atccct 23958832  T
Q  160 tttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatc 212  Q
    | |||||| |||||||||||||||||||| |||||||| || |||||||||||    
T  23958831 tgtgaagagtgagcaacctctaaaccaaggaagtatttcaattggccaagatc 23958779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 23958705 - 23958669
Alignment:
Q  286 acatcatcaacatacacaagtaaaactgtgaatgaag 322  Q
    |||||||||||||| || |||||||||||||||||||    
T  23958705 acatcatcaacataaaccagtaaaactgtgaatgaag 23958669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 30 - 366
Target Start/End: Complemental strand, 34068598 - 34068262
Alignment:
Q  30 ataaggagaactagaatcagtgtgtaattttcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaaga 129  Q
    |||||| | |||||||||| | ||||| || || |||||||||||||| || |||||||||||| |||| | ||  |  ||||||||||  | ||||||     
T  34068598 ataaggggcactagaatcattatgtaacttgcaagaagggtcagatggagtggaaacaggtttgcaagccagaagaccagtatcagttagcaaatcaagg 34068499  T
Q  130 caatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaag 229  Q
    ||||| ||||| ||||| ||||| || ||||  |||||||||||||||||||| ||||| |||||||| || || ||||| |||||||| |||||||| |    
T  34068498 caatattttctctgacatagagaaatgccttcagaagaatgagcaacctctaagccaaggaagtatttcaattgaccaaggtccttgattttaaaagagg 34068399  T
Q  230 aatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagt 329  Q
    |||||| ||||| ||| ||    || | |||||| | ||| |  || || |  ||||||||||| ||||| || ||||| || || ||||||| ||  ||    
T  34068398 aatgcaaaatggatttgatggagtgaagttcagaaagagagtcaccagcaataatcacatcatccacatagactagtaacacagtaaatgaagtagtggt 34068299  T
Q  330 cttcttgatgaagagagagtgatcagaagcagattga 366  Q
    ||||||| |||| | ||| |||||||||| |||||||    
T  34068298 cttcttggtgaacaaagaatgatcagaagtagattga 34068262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 233
Target Start/End: Original strand, 20850027 - 20850152
Alignment:
Q  108 tgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggcca 207  Q
    ||||||||| | ||||||||||||||||||||| || || | | | ||||||| |||||| ||||||| || ||||||||||||||| || ||||| |||    
T  20850027 tgtatcagtgagaagatcaagacaatactttctctggcacaaaaatattccttgtgaagagtgagcaaactttaaaccaagaaagtacttcaactgacca 20850126  T
Q  208 agatccttgatcttaaaagaagaatg 233  Q
    ||||| || || || || ||||||||    
T  20850127 agatctttaattttgaatgaagaatg 20850152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 14617862 - 14617738
Alignment:
Q  111 atcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaaga 210  Q
    |||||| | |||||| |||||||||||||| | | |||| || || ||||  ||||| |||||||||||||||||||| || ||||| || ||||| |      
T  14617862 atcagtgagaagatccagacaatactttctctaaaaaagtgaaatgccttgagaagagtgagcaacctctaaaccaaggaattatttcaattggcccaag 14617763  T
Q  211 tccttgatcttaaaagaagaatgca 235  Q
    ||||| ||||| ||||| |||||||    
T  14617762 tccttaatcttgaaagaggaatgca 14617738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 28561611 - 28561533
Alignment:
Q  163 gaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatgg 241  Q
    |||||||| || |||||||| |||||||| ||||| ||||| |||||||| || ||||| || ||||||||||| ||||    
T  28561611 gaagaatgtgccacctctaatccaagaaaatatttcaactgaccaagatctttaatcttgaaggaagaatgcaggatgg 28561533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 302
Target Start/End: Complemental strand, 12302618 - 12302377
Alignment:
Q  61 catgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattcctt 160  Q
    |||||||| ||||| || |||||||||||||||||||  | |   | |  |||||| | ||||||||  |||||||| |||||| | |  ||||||||||    
T  12302618 catgaaggttcagaaggagtagaaacaggtttggaagtcagatgacctagatcagtgagaagatcaatgcaatacttcctttgatacaaggagattcctt 12302519  T
Q  161 ttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattc 260  Q
    | || ||||| | ||| || |||  | | ||||| |||||||  |||||||| || ||||| || |||||||| || |||||||| |||| ||| |||||    
T  12302518 tagatgaatgtgaaacttcaaaatgatggaagtaatttaactaaccaagatctttaatcttgaaggaagaatgtaggatggctttcatatgttgaaattc 12302419  T
Q  261 agagatagaatttcctgctaggatcacatcatcaacatacac 302  Q
    ||| || ||||  || || | ||||| ||||| |||||||||    
T  12302418 agacatggaatcaccagcaatgatcatatcattaacatacac 12302377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 3005021 - 3004921
Alignment:
Q  127 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaag 226  Q
    |||||||||||||||||||| |  |||||||||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || ||||    
T  3005021 agacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaag 3004922  T
Q  227 a 227  Q
    |    
T  3004921 a 3004921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 8853950 - 8853841
Alignment:
Q  136 tttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 235  Q
    ||||| ||||||||||| |||||||  ||||||||||||| |||||| ||||| || || || || || |||||||||||||| ||||| || || ||||    
T  8853950 tttctctgacaaagagatattccttgagaagaatgagcaatctctaatccaaggaaatacttcaattgaccaagatccttgattttaaaggaggagtgca 8853851  T
Q  236 gaatggcttt 245  Q
    ||||||||||    
T  8853850 gaatggcttt 8853841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 18477614 - 18477565
Alignment:
Q  169 tgagcaacctctaaaccaagaaagtattttaactggccaagatccttgat 218  Q
    |||||||| ||||||||||||||  |||| ||||||||||||||||||||    
T  18477614 tgagcaacttctaaaccaagaaaaaatttcaactggccaagatccttgat 18477565  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 19666273 - 19666209
Alignment:
Q  171 agcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 235  Q
    ||||||||||||||||||||| ||||| |||||||| |  ||||| ||||| ||||| |||||||    
T  19666273 agcaacctctaaaccaagaaaatatttcaactggcccaagtccttaatcttgaaagaggaatgca 19666209  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 19813298 - 19813392
Alignment:
Q  133 tactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaaga 227  Q
    ||||||||||| || || || || |||| |  |||||||||||| ||||||||||| ||||||||||| |||| | |||| ||||| || |||||    
T  19813298 tactttctttggcatagggaaatcccttgttcagaatgagcaacttctaaaccaaggaagtattttaattggcaatgatctttgattttgaaaga 19813392  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 37737401 - 37737501
Alignment:
Q  127 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaag 226  Q
    |||||||||||||||||||| |  |||||||||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || ||||    
T  37737401 agacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaag 37737500  T
Q  227 a 227  Q
    |    
T  37737501 a 37737501  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 13427891 - 13427994
Alignment:
Q  121 agatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatct 220  Q
    |||||||||||||| |||||||| || | |  |||||| ||   ||||| ||| |||||||  |||||||| ||||||| ||||||||||||||||||||    
T  13427891 agatcaagacaatattttctttggcatatactgattccattcttagaataagccacctctatgccaagaaaatattttagctggccaagatccttgatct 13427990  T
Q  221 taaa 224  Q
    ||||    
T  13427991 taaa 13427994  T

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Target: scaffold0257 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 82 - 235
Target Start/End: Complemental strand, 8426 - 8273
Alignment:
Q  82 gaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctcta 181  Q
    ||||| |||||||||||||||   | || |||||| |  ||||| |||||||| ||| | ||||||| ||| || ||||  ||||| |||||||||||||    
T  8426 gaaactggtttggaagctaaatgacctgaatcagtgaggagatccagacaatattttttctgacaaacagatatgccttgagaagagtgagcaacctcta 8327  T
Q  182 aaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 235  Q
    |||||||||| ||||| || ||||| |  ||||| ||||| ||||| |||||||    
T  8326 aaccaagaaaatatttcaattggcccaagtccttaatcttgaaagaggaatgca 8273  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 305
Target Start/End: Original strand, 18551164 - 18551336
Alignment:
Q  133 tactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaat 232  Q
    ||||||||||| || | ||| || |||| |  ||||||||| || ||||||||||| || ||||| |||||||||||||| ||||| || |||||   ||    
T  18551164 tactttctttggcataaagatatcccttgttcagaatgagctacttctaaaccaaggaaatatttcaactggccaagatctttgattttgaaagagttat 18551263  T
Q  233 gcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaag 305  Q
    | ||||||| ||| || | ||  |||||||| |  ||||||||||||||||| | |||||| ||||| |||||    
T  18551264 gaagaatggttttgatgttttcaaattcagaaagtgaatttcctgctaggatgatatcatctacatagacaag 18551336  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 2998159 - 2998101
Alignment:
Q  124 tcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaa 182  Q
    ||||||||||||||||||||| ||| |||||| |||| |   |||||||||||||||||    
T  2998159 tcaagacaatactttctttgagaaatagagatcccttctttggaatgagcaacctctaa 2998101  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 44667108 - 44667217
Alignment:
Q  169 tgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagatag 268  Q
    ||||||||||| | ||||||||| || || ||||| || | ||| |||||||| || |||| ||||||||||| ||| |||| |||||| ||||| | ||    
T  44667108 tgagcaacctcaagaccaagaaaatagttcaactgtcccaaatctttgatcttgaatgaagcatgcagaatggatttgatatgttggaactcagaaagag 44667207  T
Q  269 aatttcctgc 278  Q
    ||||||||||    
T  44667208 aatttcctgc 44667217  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 299
Target Start/End: Original strand, 18963220 - 18963443
Alignment:
Q  76 ggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaa 175  Q
    ||||||||||||||||||||||||| |   | |  |||| | | ||||||||  ||||| || ||||| || | |||||||||||  || ||||| ||||    
T  18963220 ggtgtagaaacaggtttggaagctagatgacctaaatcaataagaagatcaatgcaatatttcctttggcacaaagagattccttgagatgaatgtgcaa 18963319  T
Q  176 cctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttcc 275  Q
    | ||||||||||| || ||||| ||||| |||||||| || || || || || |||||||| ||  | || |||| ||| |||||||| ||||  || ||    
T  18963320 cttctaaaccaaggaaatatttcaactgaccaagatctttaattttgaatgacgaatgcaggatatcattgatatgttgaaattcagacatagtgttacc 18963419  T
Q  276 tgctaggatcacatcatcaacata 299  Q
     || |  |||||||||||||||||    
T  18963420 agcaattatcacatcatcaacata 18963443  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 4643364 - 4643416
Alignment:
Q  22 acatcatcataaggagaactagaatcagtgtgtaattttcatgaagggtcaga 74  Q
    |||||||||||||||| |||||||||| |||||| ||| ||||| || |||||    
T  4643364 acatcatcataaggagcactagaatcattgtgtagtttgcatgatggatcaga 4643416  T

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