View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15621_high_2 (Length: 373)
Name: NF15621_high_2
Description: NF15621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15621_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 25 - 358
Target Start/End: Complemental strand, 2692456 - 2692123
Alignment:
| Q |
25 |
agttttgctgcttgtgaattgtcagtgttgggttcggctatttgtagttgcttacaagggtttgaactatgggatgaggggaatttgtcaggtggttgta |
124 |
Q |
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| T |
2692456 |
agttttgctgcttgtgaattgtcagtgttgggttcggctatttgtagttgcttacaagggtttgaactatgggatgaggggaatttgtcaggtggttgta |
2692357 |
T |
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| Q |
125 |
cgaggatcacagcattgaagggtgatcagagtaatggtagttttggcgaggatggtttcttggagcgtacgtatatgaagttacctgactttgcacgtgt |
224 |
Q |
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| T |
2692356 |
cgaggatcacagcattgaagggtaatcagagtaatggtagttttggcgaggatggtttcttggagcgtacgtatatgaagttacctgactttgcacatgt |
2692257 |
T |
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| Q |
225 |
ggttgttactaatgattgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagat |
324 |
Q |
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| T |
2692256 |
ggttgttactaatgattgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagat |
2692157 |
T |
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| Q |
325 |
ttggttgatgttcaacagtttgaacgtgatgatg |
358 |
Q |
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| T |
2692156 |
ttggttgatgttcaacagtttgaacgtggtgatg |
2692123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 27 - 333
Target Start/End: Complemental strand, 2700153 - 2699847
Alignment:
| Q |
27 |
ttttgctgcttgtgaattgtcagtgttgggttcggctatttgtagttgcttacaagggtttgaactatgggatgaggggaatttgtcaggtggttgtacg |
126 |
Q |
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| T |
2700153 |
ttttgcagcttgtgaattgtcggtttcgggttcggctatttgtaattgcttaaaagggtttgaactgaaggataagaggaatttgtcaagtggatgtagg |
2700054 |
T |
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| Q |
127 |
aggatcacagcattgaagggtgatcagagtaatggtagttttggcgaggatggtttcttggagcgtacgtatatgaagttacctgactttgcacgtgtgg |
226 |
Q |
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| T |
2700053 |
aggatgacagcattgaagggtgatcagaggaatggtagttttggtgaggatggttttttggtgcgtgggagtatgaagttacctgattttgcgcgtgtgg |
2699954 |
T |
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| Q |
227 |
ttgttactaatgattgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagattt |
326 |
Q |
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| T |
2699953 |
ttgatacgaaagattgtaaaggtaattgtttacagaatggttcttgtactgcttatgcagaagttattggaattggttgtatggtttggtatggagattt |
2699854 |
T |
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| Q |
327 |
ggttgat |
333 |
Q |
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| T |
2699853 |
ggttgat |
2699847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 54 - 341
Target Start/End: Complemental strand, 14521501 - 14521214
Alignment:
| Q |
54 |
gggttcggctatttgtagttgcttacaagggtttgaactatgggatgaggggaatttgtcaggtggttgtacgaggatcacagcattgaagggtgatcag |
153 |
Q |
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| T |
14521501 |
gggttgggctatttgtagttgcttacaagggtttgaactaaaggataaggagaatttgtcaagtggatgtacgaggaagacagcattgaagggtgatcag |
14521402 |
T |
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| Q |
154 |
agtaatggtagttttggcgaggatggtttcttggagcgtacgtatatgaagttacctgactttgcacgtgtggttgttactaatgattgtgaaggtaatt |
253 |
Q |
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| T |
14521401 |
acaagtgatggatttgacgaggatggtttctttgagcgtacgagtatgaagttacccgactttgcacgtgtggttgatactaaggattgtgaaggtaatt |
14521302 |
T |
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| Q |
254 |
gtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagatttggttgatgttcaaca |
341 |
Q |
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| T |
14521301 |
gtttggagaatgcttcttgtactgcttatgcagaagtaactggaattggttgtatggtttggcatggagatttggtcgatgttcaaca |
14521214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 36289235 - 36289336
Alignment:
| Q |
238 |
gattgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagatttggttgatgttc |
337 |
Q |
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||||||||||| |||||| || |||||| |||||||||||| |||| | | | ||||||||||| |||||| ||||| |||| || || |||||| ||| |
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| T |
36289235 |
gattgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagttagttgattttc |
36289334 |
T |
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| Q |
338 |
aa |
339 |
Q |
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|| |
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| T |
36289335 |
aa |
36289336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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