View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15621_high_8 (Length: 303)

Name: NF15621_high_8
Description: NF15621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15621_high_8
NF15621_high_8
[»] chr3 (8 HSPs)
chr3 (98-293)||(3592984-3593195)
chr3 (218-286)||(24177968-24178036)
chr3 (94-214)||(15777308-15777425)
chr3 (246-283)||(32657336-32657373)
chr3 (145-214)||(18534437-18534506)
chr3 (145-214)||(30993253-30993323)
chr3 (95-172)||(6460042-6460118)
chr3 (246-279)||(32658589-32658622)
[»] chr4 (7 HSPs)
chr4 (94-214)||(23974129-23974249)
chr4 (94-209)||(19611888-19612003)
chr4 (94-210)||(25126202-25126318)
chr4 (95-209)||(15706694-15706808)
chr4 (145-214)||(11153820-11153890)
chr4 (161-209)||(14645763-14645810)
chr4 (211-279)||(18552412-18552479)
[»] chr6 (2 HSPs)
chr6 (94-214)||(9548761-9548880)
chr6 (145-214)||(19769046-19769117)
[»] scaffold0281 (1 HSPs)
scaffold0281 (145-207)||(1859-1921)
[»] scaffold0088 (1 HSPs)
scaffold0088 (145-209)||(35506-35571)
[»] chr5 (2 HSPs)
chr5 (94-214)||(39435924-39436043)
chr5 (144-214)||(39176448-39176520)
[»] scaffold0094 (1 HSPs)
scaffold0094 (155-214)||(48262-48321)
[»] chr8 (2 HSPs)
chr8 (94-214)||(17290631-17290751)
chr8 (218-286)||(42147378-42147446)
[»] chr7 (7 HSPs)
chr7 (145-280)||(3310877-3311014)
chr7 (145-210)||(3312651-3312715)
chr7 (218-284)||(21859820-21859885)
chr7 (103-214)||(32945355-32945463)
chr7 (155-202)||(13695873-13695920)
chr7 (145-214)||(18147620-18147691)
chr7 (155-212)||(13696071-13696128)
[»] chr1 (5 HSPs)
chr1 (145-214)||(12786243-12786314)
chr1 (145-207)||(23632181-23632244)
chr1 (94-219)||(9131648-9131772)
chr1 (94-214)||(18513786-18513906)
chr1 (246-280)||(18513958-18513992)
[»] scaffold0019 (1 HSPs)
scaffold0019 (94-198)||(182966-183070)
[»] chr2 (5 HSPs)
chr2 (94-214)||(16093532-16093651)
chr2 (98-192)||(27386908-27387002)
chr2 (94-190)||(32623568-32623664)
chr2 (241-284)||(16093423-16093466)
chr2 (218-279)||(20180863-20180923)
[»] scaffold0005 (1 HSPs)
scaffold0005 (161-209)||(171480-171527)
[»] scaffold0815 (1 HSPs)
scaffold0815 (241-273)||(1279-1311)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 98 - 293
Target Start/End: Complemental strand, 3593195 - 3592984
Alignment:
Q  98 ggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaaggaggg 197  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |    
T  3593195 ggttgtggagagaagaggcaaggaggaatagcgagaataac-ctatggagagatttctccgtaggaaatcatcaattcggcaaactagaggtaaggggag 3593097  T
Q  198 agtctctattcat-----------------catacgtgtagtgaagagtttgtgttttacattgtttttcatgatcttttaatgaattcatgttaaattt 280  Q
    |||||||||||||                 ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3593096 agtctctattcatcataagggttgtatgatcatacgtgtagtgcagggtttatgttttacattgtttttcatgatcttttaatgaattcatgttaaattt 3592997  T
Q  281 gtgtccctctctg 293  Q
    |||||||| ||||    
T  3592996 gtgtccctttctg 3592984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 24177968 - 24178036
Alignment:
Q  218 gtagtgaagagtttgtgttttacattgtttttcatgatcttttaatgaattcatgttaaatttgtgtcc 286  Q
    ||||||||| |||| | |||| |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  24177968 gtagtgaagggtttttattttccattgtttttcatgatcttttaatgaattcatgttatattcgtgtcc 24178036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 214
Target Start/End: Original strand, 15777308 - 15777425
Alignment:
Q  94 ctagggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaagg 193  Q
    |||||||| ||||||||| | |||| ||||||||||||||| ||  |||  |||||||||||||||||||| | |||| ||  |||||||||||||||||    
T  15777308 ctagggttatggagagaataggcaaagaggaatagcgagaagaac-ctagagagagatttcaccgtaggaatttatcacttttgcaaactagaggtaagg 15777406  T
Q  194 agggagtctctattcatcata 214  Q
     |||||| | |||||||||||    
T  15777407 -gggagt-tttattcatcata 15777425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 32657336 - 32657373
Alignment:
Q  246 ttttcatgatcttttaatgaattcatgttaaatttgtg 283  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32657336 ttttcatgatcttttaatgaattcatgttaaatttgtg 32657373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 18534437 - 18534506
Alignment:
Q  145 gagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggagggagtctctattcatcata 214  Q
    ||||||||  ||| |||||||||||||| ||||  ||||||||||||||| ||||||||||||||| ||||    
T  18534437 gagagattcaaccataggaaatcatcaatttcgcaaaactagaggtaagg-gggagtctctattcaccata 18534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 30993253 - 30993323
Alignment:
Q  145 gagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggagggagtctctattcatcata 214  Q
    |||||| ||||| ||| ||| ||||||| |||  |||||||||||||||| ||||||||||||||| ||||    
T  30993253 gagagacttcactgtatgaattcatcaaattctccaaactagaggtaaggggggagtctctattcaccata 30993323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 6460118 - 6460042
Alignment:
Q  95 tagggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa 172  Q
    ||||||||||||||||||| ||||||||| ||| ||||||   |||||  ||||||||||| |||||||  |||||||    
T  6460118 tagggttgtggagagaagaggcaaggaggcataacgagaa-ggatctagagagagatttcatcgtaggatttcatcaa 6460042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 32658622 - 32658589
Alignment:
Q  246 ttttcatgatcttttaatgaattcatgttaaatt 279  Q
    |||||||||||||||||||||||||| |||||||    
T  32658622 ttttcatgatcttttaatgaattcattttaaatt 32658589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 23974249 - 23974129
Alignment:
Q  94 ctagggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaa-g 192  Q
    |||||||| |||||||||||  ||| ||||||||||||||| ||  |||  || |||||||||||||||||||||||||||| ||||||||||||||| |    
T  23974249 ctagggttatggagagaagagacaaagaggaatagcgagaagaac-ctagagaaagatttcaccgtaggaaatcatcaattctgcaaactagaggtaatg 23974151  T
Q  193 gagggagtctctattcatcata 214  Q
    | |||||| | |||||||||||    
T  23974150 gggggagtttttattcatcata 23974129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 19611888 - 19612003
Alignment:
Q  94 ctagggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 192  Q
    |||||||||||| ||||||| ||||||||| ||||||||||  || |||  ||||||||||| |||||| ||||||||| ||||  ||| |||||||| |    
T  19611888 ctagggttgtggggagaagaggcaaggagggatagcgagaa-gaacctagagagagatttcatcgtagggaatcatcaatttcgcaaaattagaggtatg 19611986  T
Q  193 gagggagtctctattca 209  Q
    | |||||||||||||||    
T  19611987 gggggagtctctattca 19612003  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 210
Target Start/End: Original strand, 25126202 - 25126318
Alignment:
Q  94 ctagggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 192  Q
    |||||||| ||| ||||||| |||| |||||||||||||||  || |||  |||| |||| | |||||||||||||||| ||||  |||||||||||| |    
T  25126202 ctagggttatggtgagaagaggcaaagaggaatagcgagaa-gaacctagagagaaatttgaacgtaggaaatcatcaatttcgcaaaactagaggtatg 25126300  T
Q  193 gagggagtctctattcat 210  Q
    | ||||||||||||||||    
T  25126301 gggggagtctctattcat 25126318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 209
Target Start/End: Complemental strand, 15706808 - 15706694
Alignment:
Q  95 tagggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaattcggcaaa-ctagaggtaagg 193  Q
    ||||||| ||||||||| |  ||| ||||||||||||||| || ||||  | ||||||||| |||| |||||||||||||  ||||| |||||||||| |    
T  15706808 tagggttatggagagaatagacaaagaggaatagcgagaagaa-tctaaagggagatttcaacgtaagaaatcatcaatttcgcaaaactagaggtaatg 15706710  T
Q  194 agggagtctctattca 209  Q
     |||||||||||||||    
T  15706709 ggggagtctctattca 15706694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 11153890 - 11153820
Alignment:
Q  145 gagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggagggagtctctattcatcata 214  Q
    |||||||||||||||| ||| ||||||| |||  | |||||||||||| | ||||||||||||||||||||    
T  11153890 gagagatttcaccgtatgaattcatcaaattcttcgaactagaggtaatgggggagtctctattcatcata 11153820  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 14645810 - 14645763
Alignment:
Q  161 ggaaatcatcaattcggcaaactagaggtaaggagggagtctctattca 209  Q
    |||| |||||||||||| ||||||||||||||| |||||||||||||||    
T  14645810 ggaagtcatcaattcggaaaactagaggtaagg-gggagtctctattca 14645763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 18552412 - 18552479
Alignment:
Q  211 catacgtgtagtgaagagtttgtgttttacattgtttttcatgatcttttaatgaattcatgttaaatt 279  Q
    |||||| |||||||||||| | ||||||| |||||||| |||| |||||||| ||||||||||| ||||    
T  18552412 catacgggtagtgaagagtgt-tgttttatattgttttgcatgttcttttaacgaattcatgtttaatt 18552479  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 9548880 - 9548761
Alignment:
Q  94 ctagggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaattcggc--aaactagaggtaa 191  Q
    ||||||||||||||||||||  |||||||| |||||||||| |||  ||  ||||||||||||||||||||||||||||||  ||  ||||||||| |||    
T  9548880 ctagggttgtggagagaagagacaaggaggcatagcgagaa-aaacgta--gagagatttcaccgtaggaaatcatcaatttcgcaaaaactagagataa 9548784  T
Q  192 ggagggagtctctattcatcata 214  Q
    || |||||||||| |||||||||    
T  9548783 ggggggagtctctgttcatcata 9548761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 19769046 - 19769117
Alignment:
Q  145 gagagatttcaccgtaggaaatcatc-aattcggcaaactagaggtaa-ggagggagtctctattcatcata 214  Q
    |||||||||||||||||||| ||||| |||||  | |||||||||||| || ||||||||||||||||||||    
T  19769046 gagagatttcaccgtaggaattcatcaaattcttcgaactagaggtaatggggggagtctctattcatcata 19769117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 1921 - 1859
Alignment:
Q  145 gagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaaggagggagtctctatt 207  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||    
T  1921 gagagatttcaccgtaggaaatcatcaattctgcaaactagaggtatggggggagtctctatt 1859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 35506 - 35571
Alignment:
Q  145 gagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggagggagtctctattca 209  Q
    |||||||||||||||||||| ||||||| |||| |||||||||||||||| |||||||||||||||    
T  35506 gagagatttcaccgtaggaactcatcaaattcgacaaactagaggtaaggggggagtctctattca 35571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 214
Target Start/End: Original strand, 39435924 - 39436043
Alignment:
Q  94 ctagggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 192  Q
    ||||| || ||||||||||||||||| ||| ||||  |||| || ||||  |||||||||||||||||||||||||||| |||   ||||||||||||||    
T  39435924 ctaggattttggagagaagatgcaagaaggcatagtaagaagaa-tctaaagagagatttcaccgtaggaaatcatcaatttcacaaaactagaggtaag 39436022  T
Q  193 gagggagtctctattcatcata 214  Q
    | ||||||||||||||| ||||    
T  39436023 g-gggagtctctattcaccata 39436043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 39176520 - 39176448
Alignment:
Q  144 ggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaa-ggagggagtctctattcatcata 214  Q
    |||||||||||||| ||| |||||||||| ||||  ||||||||||||| || || |||||||||||||||||    
T  39176520 ggagagatttcaccatagaaaatcatcaatttcgcaaaactagaggtaatgggggaagtctctattcatcata 39176448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 48321 - 48262
Alignment:
Q  155 accgtaggaaatcatcaattcggcaaactagaggtaaggagggagtctctattcatcata 214  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  48321 accgtaggaattcatcaattcggaaaactagaggtaaggggggagtctctattcaccata 48262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 17290751 - 17290631
Alignment:
Q  94 ctagggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 192  Q
    ||||||||||||||||||||  |||||||||||| ||||||  || |||  ||||||||| |||||| ||||| ||||| |||   ||| ||||||||||    
T  17290751 ctagggttgtggagagaagagacaaggaggaataacgagaa-gaacctagagagagattttaccgtatgaaattatcaatttctcaaaattagaggtaag 17290653  T
Q  193 gagggagtctctattcatcata 214  Q
    | ||||||||||||||| ||||    
T  17290652 gggggagtctctattcaccata 17290631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 42147446 - 42147378
Alignment:
Q  218 gtagtgaagagtttgtgttttacattgtttttcatgatcttttaatgaattcatgttaaatttgtgtcc 286  Q
    |||||||||  ||| | |||| |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  42147446 gtagtgaaggttttttatttttcattgtttttcatgatcttttaatgaattcatgttacattcgtgtcc 42147378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 280
Target Start/End: Complemental strand, 3311014 - 3310877
Alignment:
Q  145 gagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaaggagggagtctctattcatcatacgtgtag--tgaagagtttgtgttttacat 242  Q
    ||||||||  || ||||||| ||||||||||| |||||||||||||||| |||||||||||||||| ||| | || |  ||||| ||||||||||| | |    
T  3311014 gagagattcaacagtaggaagtcatcaattcgacaaactagaggtaagg-gggagtctctattcat-ataagggttgtatgaagggtttgtgtttttctt 3310917  T
Q  243 --tgtttttcatgatcttttaatgaattcatgttaaattt 280  Q
      |  |||||| |||||||||||||||| |||||||||||    
T  3310916 ccttgttttcacgatcttttaatgaatttatgttaaattt 3310877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 3312715 - 3312651
Alignment:
Q  145 gagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaaggagggagtctctattcat 210  Q
    ||||||||  |||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  3312715 gagagattcaaccgtaggaagtcatcaattcggcaaactagagataagg-gggagtctctattcat 3312651  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 21859820 - 21859885
Alignment:
Q  218 gtagtgaagagtttgtgttttacattgtttttcatgatcttttaatgaattcatgttaaatttgtgt 284  Q
    |||||||||||||| |||||  |||||||||||||||| ||||||||||||  ||||||||||||||    
T  21859820 gtagtgaagagtttttgtttc-cattgtttttcatgattttttaatgaatttgtgttaaatttgtgt 21859885  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 32945463 - 32945355
Alignment:
Q  103 tggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggagggagtc 201  Q
    ||||||||||| |||| |||||||||| |||| || |   | ||||||||||| |||||||||||||||| ||||  ||||||||||||||| ||||||     
T  32945463 tggagagaagaggcaaagaggaatagccagaagaact---tagagagatttcaacgtaggaaatcatcaatttcgcaaaactagaggtaaggggggagt- 32945368  T
Q  202 tctattcatcata 214  Q
    | |||||||||||    
T  32945367 tatattcatcata 32945355  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 13695920 - 13695873
Alignment:
Q  155 accgtaggaaatcatcaattcggcaaactagaggtaaggagggagtct 202  Q
    ||||||| || |||||||||||||||||||||||||||| | ||||||    
T  13695920 accgtagaaattcatcaattcggcaaactagaggtaaggggagagtct 13695873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 18147620 - 18147691
Alignment:
Q  145 gagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaa-ggagggagtctctattcatcata 214  Q
    |||||||||| ||||||||| ||||||| |||  | |||||||||||| || ||||||||||||||||||||    
T  18147620 gagagatttcgccgtaggaattcatcaaattctccgaactagaggtaatggggggagtctctattcatcata 18147691  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 13696128 - 13696071
Alignment:
Q  155 accgtaggaaatcatcaattcggcaaactagaggtaaggagggagtctctattcatca 212  Q
    ||||||| || ||||||||||||||||||||||| |||| | |||||| | |||||||    
T  13696128 accgtagaaattcatcaattcggcaaactagagggaaggggagagtctatcttcatca 13696071  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 12786314 - 12786243
Alignment:
Q  145 gagagatttcaccgtaggaaatcatc-aattcggcaaactagaggtaa-ggagggagtctctattcatcata 214  Q
    |||||||||||||||||||| ||||| |||||  |||||||||||||| || ||||||||||||||||||||    
T  12786314 gagagatttcaccgtaggaattcatcaaattctccaaactagaggtaatggggggagtctctattcatcata 12786243  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 23632181 - 23632244
Alignment:
Q  145 gagagatttcaccgtaggaaatcatc-aattcggcaaactagaggtaaggagggagtctctatt 207  Q
    |||||||||||||||||||| ||||| ||||||  ||||||||||||||| |||||| ||||||    
T  23632181 gagagatttcaccgtaggaactcatcaaattcgaaaaactagaggtaaggggggagtttctatt 23632244  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 9131648 - 9131772
Alignment:
Q  94 ctagggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 192  Q
    |||||||| ||||||||||| | || |||||||||| ||||  ||||||  |||||||||    ||||||||||||||| ||||  ||||| ||||||||    
T  9131648 ctagggttatggagagaagaagtaaagaggaatagcaagaa-gaatctaaagagagattttgttgtaggaaatcatcaatttcgcaaaactcgaggtaag 9131746  T
Q  193 gagggagtctctattcatcatacgtgt 219  Q
    || |||||||||||||| |||| ||||    
T  9131747 ga-ggagtctctattcaccataagtgt 9131772  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 214
Target Start/End: Original strand, 18513786 - 18513906
Alignment:
Q  94 ctagggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 192  Q
    |||||||| ||||||||||| || | ||||||||| |||||  || |||  ||||||||| | | |||||||||||||| ||||  |||||| |||||||    
T  18513786 ctagggttatggagagaagaggccaagaggaatagtgagaa-gaacctagagagagattttaacataggaaatcatcaatttcgcaaaactaaaggtaag 18513884  T
Q  193 gagggagtctctattcatcata 214  Q
    | || |||||||||||| ||||    
T  18513885 ggggaagtctctattcaccata 18513906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 280
Target Start/End: Original strand, 18513958 - 18513992
Alignment:
Q  246 ttttcatgatcttttaatgaattcatgttaaattt 280  Q
    |||||||||||||||||| ||||||||||||||||    
T  18513958 ttttcatgatcttttaataaattcatgttaaattt 18513992  T

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Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 198
Target Start/End: Complemental strand, 183070 - 182966
Alignment:
Q  94 ctagggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatc-aattcggcaaactagaggtaag 192  Q
    |||||||||||||||||||| ||||||||| |||| ||||  ||   ||   |||||||||||||||| |||||||| ||||| ||||||||||||||||    
T  183070 ctagggttgtggagagaagaggcaaggaggcatagggagaggaacg-tagatagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaag 182972  T
Q  193 gaggga 198  Q
    | ||||    
T  182971 ggggga 182966  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 16093651 - 16093532
Alignment:
Q  94 ctagggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaagg 193  Q
    |||||||| ||||||||| | |||| || |||||||||||  ||  |||  |||||||||||| |||| || |||||| ||  ||||||||||||||||     
T  16093651 ctagggttatggagagaaaaggcaaagatgaatagcgagaggaac-ctagagagagatttcactgtagaaattcatcacttttgcaaactagaggtaaga 16093553  T
Q  194 agggagtctctattcatcata 214  Q
     ||||||||||||||| ||||    
T  16093552 ggggagtctctattcaccata 16093532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 27386908 - 27387002
Alignment:
Q  98 ggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 192  Q
    |||||||||||||||| ||||||||| || |||||||  || |||  ||||||||||||||||| ||||||| || ||||  ||||||||||||||    
T  27386908 ggttgtggagagaagaggcaaggaggcatggcgagaa-gaacctagagagagatttcaccgtagaaaatcattaatttcgcaaaactagaggtaag 27387002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 32623568 - 32623664
Alignment:
Q  94 ctagggttgtggagagaagatgcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaattcggc-aaactagaggta 190  Q
    |||||||| ||||  ||||| |||| |||||||| |||||| || ||||  ||||||||||||||||| ||||||||||||  || ||||||||||||    
T  32623568 ctagggttatggaatgaagaggcaaagaggaataacgagaagaa-tctagagagagatttcaccgtagaaaatcatcaattttgcaaaactagaggta 32623664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 16093466 - 16093423
Alignment:
Q  241 attgtttttcatgatcttttaatgaattcatgttaaatttgtgt 284  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||    
T  16093466 attgtttttcatgatcttttaatgaaaccatgttaaattcgtgt 16093423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 20180923 - 20180863
Alignment:
Q  218 gtagtgaagagtttgtgttttacattgtttttcatgatcttttaatgaattcatgttaaatt 279  Q
    ||||||||||| || ||||||  ||||  ||||||||| |||||||||||||||||||||||    
T  20180923 gtagtgaagagcttttgttttctattgggtttcatgat-ttttaatgaattcatgttaaatt 20180863  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 171480 - 171527
Alignment:
Q  161 ggaaatcatcaattcggcaaactagaggtaaggagggagtctctattca 209  Q
    |||| |||||||||||| ||||||||||||||| |||||||||||||||    
T  171480 ggaagtcatcaattcggaaaactagaggtaagg-gggagtctctattca 171527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 1311 - 1279
Alignment:
Q  241 attgtttttcatgatcttttaatgaattcatgt 273  Q
    |||||||||||||||||||||||||||| ||||    
T  1311 attgtttttcatgatcttttaatgaattaatgt 1279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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