View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15622_high_1 (Length: 390)

Name: NF15622_high_1
Description: NF15622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15622_high_1
NF15622_high_1
[»] scaffold0019 (2 HSPs)
scaffold0019 (140-373)||(103827-104061)
scaffold0019 (29-73)||(103789-103833)
[»] chr8 (9 HSPs)
chr8 (193-242)||(7008700-7008749)
chr8 (192-242)||(2487926-2487976)
chr8 (193-242)||(16162862-16162911)
chr8 (205-242)||(44236754-44236791)
chr8 (204-239)||(30191071-30191106)
chr8 (201-241)||(3953905-3953945)
chr8 (194-242)||(4560604-4560652)
chr8 (193-237)||(11059648-11059692)
chr8 (202-242)||(24326133-24326173)
[»] chr2 (11 HSPs)
chr2 (189-241)||(40944016-40944068)
chr2 (192-239)||(35378450-35378497)
chr2 (205-259)||(12464933-12464987)
chr2 (193-242)||(11513998-11514047)
chr2 (193-242)||(15370242-15370291)
chr2 (193-242)||(33942008-33942057)
chr2 (193-242)||(40759262-40759311)
chr2 (193-242)||(41170712-41170761)
chr2 (188-232)||(36125471-36125515)
chr2 (193-241)||(43259938-43259986)
chr2 (193-237)||(43529777-43529821)
[»] chr5 (11 HSPs)
chr5 (193-242)||(25720336-25720385)
chr5 (195-242)||(10771809-10771856)
chr5 (193-241)||(41535023-41535071)
chr5 (287-345)||(15086705-15086763)
chr5 (194-240)||(26516511-26516557)
chr5 (188-242)||(36542200-36542254)
chr5 (281-334)||(9895148-9895201)
chr5 (192-241)||(14714761-14714810)
chr5 (193-238)||(41820133-41820178)
chr5 (192-240)||(912565-912613)
chr5 (192-232)||(43300990-43301030)
[»] chr7 (10 HSPs)
chr7 (187-222)||(12110489-12110524)
chr7 (194-240)||(7513663-7513709)
chr7 (193-241)||(3610659-3610707)
chr7 (192-242)||(33894729-33894779)
chr7 (193-242)||(1418521-1418570)
chr7 (193-242)||(6977518-6977567)
chr7 (188-241)||(19624280-19624333)
chr7 (200-241)||(20547316-20547357)
chr7 (200-241)||(32410643-32410684)
chr7 (200-240)||(425749-425789)
[»] chr3 (15 HSPs)
chr3 (195-242)||(27294448-27294495)
chr3 (193-242)||(44014717-44014766)
chr3 (192-232)||(33046716-33046756)
chr3 (193-241)||(44237520-44237568)
chr3 (195-242)||(41057257-41057304)
chr3 (188-242)||(43875567-43875622)
chr3 (205-239)||(20685680-20685714)
chr3 (200-242)||(22667505-22667547)
chr3 (200-242)||(22724144-22724186)
chr3 (188-242)||(30657388-30657442)
chr3 (200-237)||(1125691-1125728)
chr3 (194-239)||(4013398-4013443)
chr3 (193-238)||(11253607-11253652)
chr3 (201-242)||(25699125-25699166)
chr3 (204-241)||(27795943-27795980)
[»] chr4 (10 HSPs)
chr4 (195-241)||(1075561-1075607)
chr4 (198-242)||(3549479-3549523)
chr4 (195-242)||(50746077-50746124)
chr4 (188-234)||(679401-679447)
chr4 (192-234)||(2811581-2811623)
chr4 (188-242)||(6428120-6428174)
chr4 (205-242)||(32071965-32072002)
chr4 (199-239)||(28615629-28615669)
chr4 (193-237)||(29126182-29126226)
chr4 (193-241)||(41433478-41433526)
[»] chr6 (12 HSPs)
chr6 (193-242)||(7351590-7351639)
chr6 (193-236)||(4308885-4308928)
chr6 (187-242)||(33080491-33080546)
chr6 (200-242)||(3738203-3738245)
chr6 (188-238)||(9732572-9732622)
chr6 (188-234)||(25103212-25103258)
chr6 (193-222)||(30641867-30641896)
chr6 (192-232)||(4163265-4163305)
chr6 (192-232)||(4224886-4224926)
chr6 (193-241)||(4308672-4308720)
chr6 (193-237)||(9327139-9327183)
chr6 (188-232)||(10645299-10645343)
[»] chr1 (8 HSPs)
chr1 (192-237)||(3914992-3915037)
chr1 (193-232)||(2295208-2295247)
chr1 (200-242)||(35017684-35017726)
chr1 (193-242)||(21002257-21002306)
chr1 (195-244)||(34668756-34668805)
chr1 (197-241)||(5047249-5047293)
chr1 (202-242)||(31517668-31517708)
chr1 (190-242)||(48748511-48748563)
[»] scaffold0004 (1 HSPs)
scaffold0004 (204-240)||(98580-98616)


Alignment Details
Target: scaffold0019 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 140 - 373
Target Start/End: Original strand, 103827 - 104061
Alignment:
Q  140 ttgttttttcttc--ataaattcacgtcttttaaacttgttttgcattgtgggtatgtttgaattggcttatttgagtttatctaatggcataagcactt 237  Q
    |||||||||||||  ||| ||||| || |||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  103827 ttgttttttcttcctatatattcatgt-ttttaagcttgttttgaactgtgggtatgtttgaattggcttatttgagtttatctagtggcataagcagtt 103925  T
Q  238 gtgagctatgaagcacagacaccaaacacgacactacacgccaacaccagtaatattatgagtaaatgaattgtttgtacgtaatcacatgtgttggcgt 337  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  103926 gtgagctatgaagcacaaacaccaaacacgacactacacgccaacaccagtaataatatgagtaaatgaattgtttgtacgtaatcacatgtgttggcgt 104025  T
Q  338 cggacaccaacacaacacatgtcggactccggacac 373  Q
    ||||||||||||||||||||||||||||||||||||    
T  104026 cggacaccaacacaacacatgtcggactccggacac 104061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 103789 - 103833
Alignment:
Q  29 tgttctgtttgtgaaaaccaaagcaaaatgtaacctttttgtttt 73  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  103789 tgttctgtttgtgaaaaccaaatcaaaatgtaacctttttgtttt 103833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 7008749 - 7008700
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  7008749 tgtttgaattgacttatttgagtttatctactggcataagcacttgtgag 7008700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 2487926 - 2487976
Alignment:
Q  192 atgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    ||||||| ||||||||||||||||| ||||| || ||||||||||||||||    
T  2487926 atgtttggattggcttatttgagttcatctactgacataagcacttgtgag 2487976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 16162911 - 16162862
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||| ||||||||||||||||||||||| | |||||| ||||||||||    
T  16162911 tgtttggattggcttatttgagtttatctactagcataaacacttgtgag 16162862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 44236754 - 44236791
Alignment:
Q  205 cttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||||||||||||||| |||||||||||||||||||    
T  44236754 cttatttgagtttatctactggcataagcacttgtgag 44236791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 30191071 - 30191106
Alignment:
Q  204 gcttatttgagtttatctaatggcataagcacttgt 239  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30191071 gcttatttgagtttatctattggcataagcacttgt 30191106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 3953945 - 3953905
Alignment:
Q  201 ttggcttatttgagtttatctaatggcataagcacttgtga 241  Q
    ||||||||||||||  |||||| ||||||||||||||||||    
T  3953945 ttggcttatttgagcctatctactggcataagcacttgtga 3953905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 4560652 - 4560604
Alignment:
Q  194 gtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    ||||| |||| |||||||||| ||||||| || ||||||||||||||||    
T  4560652 gtttggattgacttatttgagcttatctattgacataagcacttgtgag 4560604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 11059648 - 11059692
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcactt 237  Q
    ||||||||||| ||||| |||| |||||||||| |||||||||||    
T  11059648 tgtttgaattgacttatgtgagcttatctaatgacataagcactt 11059692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 24326173 - 24326133
Alignment:
Q  202 tggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    ||||| ||||||| ||||||| |||||||||||||||||||    
T  24326173 tggctaatttgagcttatctactggcataagcacttgtgag 24326133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 40944068 - 40944016
Alignment:
Q  189 ggtatgtttgaattggcttatttgagtttatctaatggcataagcacttgtga 241  Q
    |||||||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  40944068 ggtatgtttggattagcttatttgagtttatctaatgacataagcacttgtga 40944016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 35378450 - 35378497
Alignment:
Q  192 atgtttgaattggcttatttgagtttatctaatggcataagcacttgt 239  Q
    ||||||| ||||||||||||||| |||| |||| ||||||||||||||    
T  35378450 atgtttggattggcttatttgagcttatataatagcataagcacttgt 35378497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 12464987 - 12464933
Alignment:
Q  205 cttatttgagtttatctaatggcataagcacttgtgagctatgaagcacagacac 259  Q
    |||||||||||||||||| |||| ||| || || ||||||||||| |||||||||    
T  12464987 cttatttgagtttatctattggcgtaaacatttatgagctatgaaacacagacac 12464933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 11514047 - 11513998
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||| ||||| ||||||||| ||||||| | |||||||||||||||||    
T  11514047 tgtttggattggtttatttgagattatctactagcataagcacttgtgag 11513998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 15370242 - 15370291
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||| |||| |||||||||| ||||||| ||||||||||| |||||||    
T  15370242 tgtttggattgacttatttgagcttatctactggcataagcatttgtgag 15370291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 33942057 - 33942008
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||| ||||||||||||||| ||||||| ||||||||| ||| |||||    
T  33942057 tgtttggattggcttatttgaggttatctactggcataagtactagtgag 33942008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 40759311 - 40759262
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||| |||| |||||||||| ||||||| || ||||||||||||||||    
T  40759311 tgtttggattgccttatttgagcttatctattgacataagcacttgtgag 40759262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 41170761 - 41170712
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||| ||||||||||||||||||||||| |  ||||| ||||||||||    
T  41170761 tgtttggattggcttatttgagtttatctactaacataaacacttgtgag 41170712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 36125515 - 36125471
Alignment:
Q  188 gggtatgtttgaattggcttatttgagtttatctaatggcataag 232  Q
    ||||||||||| ||| | ||||||||||||||||| |||||||||    
T  36125515 gggtatgtttggattcgtttatttgagtttatctactggcataag 36125471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 43259986 - 43259938
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtga 241  Q
    |||||| ||||||||||||||  ||||||| | ||||||||||||||||    
T  43259986 tgtttggattggcttatttgaacttatctactagcataagcacttgtga 43259938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 43529777 - 43529821
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcactt 237  Q
    ||||||||||| |||||||||| ||||||| ||| ||||||||||    
T  43529777 tgtttgaattgacttatttgagcttatctattggtataagcactt 43529821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 25720336 - 25720385
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||||||||    
T  25720336 tgtttgaattagcttatttgaggttatctactggcataagcacttgtgag 25720385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 10771809 - 10771856
Alignment:
Q  195 tttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||| ||||||||||||||| ||||||| |||||||||||||||||||    
T  10771809 tttggattggcttatttgagcttatctactggcataagcacttgtgag 10771856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 41535023 - 41535071
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtga 241  Q
    |||||||||||||||||||||| | ||||| || |||||||||||||||    
T  41535023 tgtttgaattggcttatttgagctcatctactgccataagcacttgtga 41535071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 345
Target Start/End: Original strand, 15086705 - 15086763
Alignment:
Q  287 gtaatattatgagtaaatgaattgtttgtacgtaatcacatgtgttggcgtcggacacc 345  Q
    |||||| | |||| || |||||| |||| ||||||||||||||||||| ||||||||||    
T  15086705 gtaataatttgagaaagtgaattatttgaacgtaatcacatgtgttggtgtcggacacc 15086763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 26516557 - 26516511
Alignment:
Q  194 gtttgaattggcttatttgagtttatctaatggcataagcacttgtg 240  Q
    ||||||||| |||||||||||||||| || |||||||||||| ||||    
T  26516557 gtttgaattagcttatttgagtttatttactggcataagcacctgtg 26516511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 36542200 - 36542254
Alignment:
Q  188 gggtatgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||||||||||||||||| |||||| ||||||| |  ||||||||||| ||||    
T  36542200 gggtatgtttgaattggcttgtttgagcttatctactaacataagcacttatgag 36542254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 9895148 - 9895201
Alignment:
Q  281 acaccagtaatattatgagtaaatgaattgtttgtacgtaatcacatgtgttgg 334  Q
    |||||||||||| | |||| |||| |||| |||| |||||||||||||||||||    
T  9895148 acaccagtaataatttgagaaaataaattatttgaacgtaatcacatgtgttgg 9895201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 14714761 - 14714810
Alignment:
Q  192 atgtttgaattggcttatttgagtttatctaatggcataagcacttgtga 241  Q
    ||||||||||||||| ||||||| ||||| | || |||||||||||||||    
T  14714761 atgtttgaattggctcatttgagcttatccactgacataagcacttgtga 14714810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 41820178 - 41820133
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttg 238  Q
    |||||||||||||||||||||| ||||| |  ||||||||||||||    
T  41820178 tgtttgaattggcttatttgagcttatccacgggcataagcacttg 41820133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 912565 - 912613
Alignment:
Q  192 atgtttgaattggcttatttgagtttatctaatggcataagcacttgtg 240  Q
    ||||||| |||||||||||| || ||||||| || ||||||||||||||    
T  912565 atgtttggattggcttattttaggttatctattgtcataagcacttgtg 912613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 43301030 - 43300990
Alignment:
Q  192 atgtttgaattggcttatttgagtttatctaatggcataag 232  Q
    ||||||| ||||||||||||||| |||| ||||||||||||    
T  43301030 atgtttggattggcttatttgagcttatataatggcataag 43300990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 12110524 - 12110489
Alignment:
Q  187 tgggtatgtttgaattggcttatttgagtttatcta 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  12110524 tgggtatgtttgaattggcttatttgagtttatcta 12110489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 7513709 - 7513663
Alignment:
Q  194 gtttgaattggcttatttgagtttatctaatggcataagcacttgtg 240  Q
    |||||||||| |||||||||| ||||||| |||||||||||||||||    
T  7513709 gtttgaattgacttatttgagcttatctactggcataagcacttgtg 7513663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 3610659 - 3610707
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtga 241  Q
    |||||||||||||||||||||| ||||||| |||| ||| |||||||||    
T  3610659 tgtttgaattggcttatttgagcttatctactggcctaaccacttgtga 3610707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 33894779 - 33894729
Alignment:
Q  192 atgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    ||||||| ||| ||||||||||| ||||| |||| ||||||||||||||||    
T  33894779 atgtttggattagcttatttgagcttatcaaatgacataagcacttgtgag 33894729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 1418570 - 1418521
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||| |||| |||||||||| ||||||| |||||||||||||| ||||    
T  1418570 tgtttggattgacttatttgagcttatctactggcataagcacttatgag 1418521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 6977567 - 6977518
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||| |||| |||||| ||||||||||| ||||||||||| |||||||    
T  6977567 tgtttggattgacttattagagtttatctattggcataagcatttgtgag 6977518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 19624333 - 19624280
Alignment:
Q  188 gggtatgtttgaattggcttatttgagtttatctaatggcataagcacttgtga 241  Q
    |||| ||||||  ||| |||||||||||||||||| || |||||||||||||||    
T  19624333 gggtttgtttggcttgacttatttgagtttatctattgacataagcacttgtga 19624280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 20547316 - 20547357
Alignment:
Q  200 attggcttatttgagtttatctaatggcataagcacttgtga 241  Q
    |||||||||||| ||||||||||||| ||||| |||||||||    
T  20547316 attggcttattttagtttatctaatgacataaacacttgtga 20547357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 32410684 - 32410643
Alignment:
Q  200 attggcttatttgagtttatctaatggcataagcacttgtga 241  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||    
T  32410684 attggcttatttgagcttatctattggcataagcatttgtga 32410643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 425749 - 425789
Alignment:
Q  200 attggcttatttgagtttatctaatggcataagcacttgtg 240  Q
    ||||||||||||||| ||||||| |||||||||||| ||||    
T  425749 attggcttatttgagattatctactggcataagcacatgtg 425789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 27294495 - 27294448
Alignment:
Q  195 tttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||||||||||| ||||||||||||| || ||||||||||||||||    
T  27294495 tttgaattggcttacttgagtttatctattgtcataagcacttgtgag 27294448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 44014717 - 44014766
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||| ||||||||||||||||||||||| | |||||| ||||||||||    
T  44014717 tgtttggattggcttatttgagtttatctactagcataaacacttgtgag 44014766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 33046716 - 33046756
Alignment:
Q  192 atgtttgaattggcttatttgagtttatctaatggcataag 232  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  33046716 atgtttgaattggcttattttagtttatctactggcataag 33046756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 44237568 - 44237520
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtga 241  Q
    ||||| |||||| ||||||||||||||||| || |||||||||||||||    
T  44237568 tgtttaaattggtttatttgagtttatctactgacataagcacttgtga 44237520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 41057304 - 41057257
Alignment:
Q  195 tttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||||||||||||||||| |||||||   |||||||||||||||||    
T  41057304 tttgaattggcttatttgagcttatctacatgcataagcacttgtgag 41057257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 43875622 - 43875567
Alignment:
Q  188 gggtatgtttgaattggcttatttgagtttatctaatgg-cataagcacttgtgag 242  Q
    |||| ||||||||||| |||||||||||||||||| |||  |||||||||||||||    
T  43875622 gggtttgtttgaattgacttatttgagtttatctactggttataagcacttgtgag 43875567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 20685714 - 20685680
Alignment:
Q  205 cttatttgagtttatctaatggcataagcacttgt 239  Q
    |||||||||||||||||| ||||||||||||||||    
T  20685714 cttatttgagtttatctattggcataagcacttgt 20685680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 22667547 - 22667505
Alignment:
Q  200 attggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    ||||||||||||||| ||||||| || ||||||||||||||||    
T  22667547 attggcttatttgagcttatctactgacataagcacttgtgag 22667505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 22724186 - 22724144
Alignment:
Q  200 attggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    ||||||||||||||| ||||||| || ||||||||||||||||    
T  22724186 attggcttatttgagcttatctactgacataagcacttgtgag 22724144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 30657442 - 30657388
Alignment:
Q  188 gggtatgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||| |||||||||||  ||||||||||||||||| || ||||||||||| ||||    
T  30657442 gggtctgtttgaattgatttatttgagtttatctactgacataagcacttttgag 30657388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 1125691 - 1125728
Alignment:
Q  200 attggcttatttgagtttatctaatggcataagcactt 237  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  1125691 attggcttatttgagtttaactactggcataagcactt 1125728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 4013398 - 4013443
Alignment:
Q  194 gtttgaattggcttatttgagtttatctaatggcataagcacttgt 239  Q
    ||||||||||||||||||||||||||  | ||| ||||||||||||    
T  4013398 gtttgaattggcttatttgagtttattgactgggataagcacttgt 4013443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 11253652 - 11253607
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttg 238  Q
    ||||||||||| |||||||||| ||||||| | |||||||||||||    
T  11253652 tgtttgaattgacttatttgagattatctactagcataagcacttg 11253607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 25699125 - 25699166
Alignment:
Q  201 ttggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||||||||||||||||||| || ||||||||||| ||||    
T  25699125 ttggcttatttgagtttatctattgacataagcacttatgag 25699166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 27795943 - 27795980
Alignment:
Q  204 gcttatttgagtttatctaatggcataagcacttgtga 241  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  27795943 gcttatttgagcttatctactggcataagcacttgtga 27795980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 1075607 - 1075561
Alignment:
Q  195 tttgaattggcttatttgagtttatctaatggcataagcacttgtga 241  Q
    |||||||||||||||||||| ||||||| |||||||| |||||||||    
T  1075607 tttgaattggcttatttgagcttatctactggcataaacacttgtga 1075561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 3549479 - 3549523
Alignment:
Q  198 gaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||||||||||| |||||||||| |||||||||||||| ||||    
T  3549479 gaattggcttattttagtttatctattggcataagcacttatgag 3549523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 50746124 - 50746077
Alignment:
Q  195 tttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||| |||| |||||||||||||||||| | |||||||||||||||||    
T  50746124 tttgtattgacttatttgagtttatctacttgcataagcacttgtgag 50746077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 679447 - 679401
Alignment:
Q  188 gggtatgtttgaattggcttatttgagtttatctaatggcataagca 234  Q
    |||| ||||||||||| |||||||||||||||||| ||| |||||||    
T  679447 gggtctgtttgaattgacttatttgagtttatctactggtataagca 679401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 2811623 - 2811581
Alignment:
Q  192 atgtttgaattggcttatttgagtttatctaatggcataagca 234  Q
    |||||||||||| |||||||||| ||||||| |||||||||||    
T  2811623 atgtttgaattgacttatttgaggttatctactggcataagca 2811581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 6428174 - 6428120
Alignment:
Q  188 gggtatgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||| ||||||||||| |||||||||| |||| || ||| |||||||||||||||    
T  6428174 gggtttgtttgaattgacttatttgagcttatatattggtataagcacttgtgag 6428120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 32072002 - 32071965
Alignment:
Q  205 cttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||||||||||||||| || ||||||||||||||||    
T  32072002 cttatttgagtttatctattgacataagcacttgtgag 32071965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 28615669 - 28615629
Alignment:
Q  199 aattggcttatttgagtttatctaatggcataagcacttgt 239  Q
    |||||||||||||||| |||||||||| |||||||| ||||    
T  28615669 aattggcttatttgagcttatctaatgacataagcatttgt 28615629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 29126182 - 29126226
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcactt 237  Q
    |||||| ||||||||||||||| |||||||  |||||||||||||    
T  29126182 tgtttggattggcttatttgagcttatctaccggcataagcactt 29126226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 41433526 - 41433478
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtga 241  Q
    ||||||||||| |||||||||||||||||  || |||||||| ||||||    
T  41433526 tgtttgaattgacttatttgagtttatctcctgacataagcatttgtga 41433478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 7351590 - 7351639
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    ||||| ||||| |||||||||||||||||| || ||||||||||||||||    
T  7351590 tgtttaaattgacttatttgagtttatctactgacataagcacttgtgag 7351639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 4308928 - 4308885
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcact 236  Q
    |||||| ||||||||||||||||||||||| || ||||||||||    
T  4308928 tgtttggattggcttatttgagtttatctactgacataagcact 4308885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 33080491 - 33080546
Alignment:
Q  187 tgggtatgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||| ||||||| || |||||||||||| |||| || |||||||||||||||||||    
T  33080491 tgggcatgtttggataggcttatttgagcttatttactggcataagcacttgtgag 33080546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 3738245 - 3738203
Alignment:
Q  200 attggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||| |||||||||||||||||| | |||||||||||||||||    
T  3738245 attgacttatttgagtttatctactagcataagcacttgtgag 3738203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 9732622 - 9732572
Alignment:
Q  188 gggtatgtttgaattggcttatttgagtttatctaatggcataagcacttg 238  Q
    |||| |||||| ||| ||||||||||||||||||| ||| |||||||||||    
T  9732622 gggtttgtttggatttgcttatttgagtttatctactggtataagcacttg 9732572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 25103212 - 25103258
Alignment:
Q  188 gggtatgtttgaattggcttatttgagtttatctaatggcataagca 234  Q
    |||| |||||||||||||| ||||||| ||||||| |||||||||||    
T  25103212 gggtctgtttgaattggctaatttgagcttatctattggcataagca 25103258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 30641896 - 30641867
Alignment:
Q  193 tgtttgaattggcttatttgagtttatcta 222  Q
    ||||||||||||||||||||||||||||||    
T  30641896 tgtttgaattggcttatttgagtttatcta 30641867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 4163305 - 4163265
Alignment:
Q  192 atgtttgaattggcttatttgagtttatctaatggcataag 232  Q
    ||||||| ||||||||||||||| ||||||| |||||||||    
T  4163305 atgtttggattggcttatttgagcttatctactggcataag 4163265  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 4224926 - 4224886
Alignment:
Q  192 atgtttgaattggcttatttgagtttatctaatggcataag 232  Q
    ||||||| ||||||||||||||| ||||||| |||||||||    
T  4224926 atgtttggattggcttatttgagcttatctactggcataag 4224886  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 4308720 - 4308672
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtga 241  Q
    ||||||||||| |||||||||||| || || ||||||||||||| ||||    
T  4308720 tgtttgaattgacttatttgagttaatttactggcataagcactagtga 4308672  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 9327183 - 9327139
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcactt 237  Q
    |||||| ||||||| ||||||||||||||| ||| ||||||||||    
T  9327183 tgtttggattggctaatttgagtttatctactggtataagcactt 9327139  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 10645299 - 10645343
Alignment:
Q  188 gggtatgtttgaattggcttatttgagtttatctaatggcataag 232  Q
    ||||||||||| ||||||| ||||||| |||||||||| ||||||    
T  10645299 gggtatgtttggattggctaatttgaggttatctaatgacataag 10645343  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 3915037 - 3914992
Alignment:
Q  192 atgtttgaattggcttatttgagtttatctaatggcataagcactt 237  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||||    
T  3915037 atgtttgaattggcttatttgaatttatctactggcataaggactt 3914992  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 2295247 - 2295208
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataag 232  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  2295247 tgtttgaattggcttatttgagcttatctactggcataag 2295208  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 35017726 - 35017684
Alignment:
Q  200 attggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||    
T  35017726 attggcttatttgagcttatctattggcataaacacttgtgag 35017684  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 21002306 - 21002257
Alignment:
Q  193 tgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||| ||||||||||||||| ||||||| | ||||||| |||||||||    
T  21002306 tgtttggattggcttatttgagcttatctacttgcataagaacttgtgag 21002257  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 34668805 - 34668756
Alignment:
Q  195 tttgaattggcttatttgagtttatctaatggcataagcacttgtgagct 244  Q
    |||| |||||||||||||||||||| || || ||| ||||||||||||||    
T  34668805 tttggattggcttatttgagtttatgtactgacatgagcacttgtgagct 34668756  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 5047293 - 5047249
Alignment:
Q  197 tgaattggcttatttgagtttatctaatggcataagcacttgtga 241  Q
    |||||||||||||||||| ||||||| || |||| ||||||||||    
T  5047293 tgaattggcttatttgagcttatctattgacataggcacttgtga 5047249  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 31517668 - 31517708
Alignment:
Q  202 tggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    ||||||||||||| |||| || |||||||||||||||||||    
T  31517668 tggcttatttgagcttatttactggcataagcacttgtgag 31517708  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 48748511 - 48748563
Alignment:
Q  190 gtatgtttgaattggcttatttgagtttatctaatggcataagcacttgtgag 242  Q
    |||||||||||||| |||||||||| ||||| | || ||||| ||||||||||    
T  48748511 gtatgtttgaattgacttatttgagcttatccattgacataaacacttgtgag 48748563  T

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Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 98580 - 98616
Alignment:
Q  204 gcttatttgagtttatctaatggcataagcacttgtg 240  Q
    ||||||||||| |||||||||||||||||||||||||    
T  98580 gcttatttgagcttatctaatggcataagcacttgtg 98616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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