View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15622_high_2 (Length: 332)
Name: NF15622_high_2
Description: NF15622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15622_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 42535138 - 42534807
Alignment:
| Q |
1 |
gtcattgttcttgttgtagaagagtctcctgatgaggtcgttaggatgcagattcataaagcaaatcctctcatctgtttcactactaaaagctgcacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42535138 |
gtcattgttcttgttgtagaagagtctcctgatgaggtcgttaggatgcagattcataaagcaaatcctctcatctgtttcactactaaaagctgcacaa |
42535039 |
T |
|
| Q |
101 |
agaccagattcgacaagaacaaatacaatgtttttagcagcagtgatctgaacaattttggtccttcccatcaaaaagggcaagatatgtggaggagatt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42535038 |
agaccagattcggcaagaacaaatacaatgtttttagcagcagtgatctgaacaattttggtccttcccatcaaaaagggcaagatatgtggaggagatt |
42534939 |
T |
|
| Q |
201 |
tatgtt-------atgagtgtcaagttcatgactgaaacgcatgttttggaatctatgtggagtagtagcagtaacaaaagcacgatgatgtttacaaga |
293 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42534938 |
tatgtttagaatgatgagtgtcaagttcatgactgaaacgcatgttttggaatctatgtggagtagtagcagtaacaaaagcacgatgatgtttacaaga |
42534839 |
T |
|
| Q |
294 |
taactcgcggtcttgaaggttcttgatgatgt |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42534838 |
taactcgcggtcttgaaggttcttgatgatgt |
42534807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 42528315 - 42528235
Alignment:
| Q |
245 |
atctatgtggagtagtagcagtaacaaaagcacgatgatgtttacaagataactcgcggtcttgaaggttcttgatgatgt |
325 |
Q |
| |
|
|||||||||| | |||| ||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42528315 |
atctatgtggggcagtaacagcaacaaaagcacgatgaggtttagaagataactcgcggtcttgaaggttcttgatgatgt |
42528235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 27820306 - 27820188
Alignment:
| Q |
207 |
atgagtgtcaagttcatgactgaaacgcatgttttggaatctatgtggagtagtagcagtaacaaaagcacgatgatgtttacaagataactcgcggtct |
306 |
Q |
| |
|
|||||| |||| || |||| | ||||||||||| |||||||||||||| | |||||||| |||||| | ||||||| ||||| ||| | |||||| | |
|
|
| T |
27820306 |
atgagtatcaaattgatgagtcaaacgcatgttctggaatctatgtggtgaagtagcagcaacaaaggaacgatgaggtttaggagaaatctcgcgagtt |
27820207 |
T |
|
| Q |
307 |
tgaaggttcttgatgatgt |
325 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
27820206 |
tgaagcttcttgatgatgt |
27820188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 27821922 - 27821842
Alignment:
| Q |
1 |
gtcattgttcttgttgtagaagagtctcctgatgaggtcgttaggatgcagattcataaagcaaatcctctcatctgtttc |
81 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||| |||| ||| | ||||| ||||||||||||||||| |||||| |
|
|
| T |
27821922 |
gtcattgttcttgttgtagaagaggctgcggatgacttcgtcagggcagatattcaaaaagcaaatcctctcatttgtttc |
27821842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University