View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15622_low_5 (Length: 203)
Name: NF15622_low_5
Description: NF15622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15622_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 57 - 192
Target Start/End: Original strand, 1095865 - 1096000
Alignment:
| Q |
57 |
agtgagtaagaatacttttcattatagggcaacactagtaacacctcctagttattagtggccgtttcattgttaggtggaacacctagaatgcctttgt |
156 |
Q |
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| T |
1095865 |
agtgagtaagaatacttttcattatagggcaacactagtaacacctcctagttattagtggtcgtttcattgttaggtggaacacctagaatgcctttgt |
1095964 |
T |
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| Q |
157 |
ttaattttcgtcattgtattcaggctgcgaattctg |
192 |
Q |
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| T |
1095965 |
caaattttcgtcattgtattcaggctgcaaattctg |
1096000 |
T |
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Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 57 - 191
Target Start/End: Complemental strand, 9891419 - 9891284
Alignment:
| Q |
57 |
agtgagtaagaatacttttcattatagggcaacactagt-aacacctcctagttattagtggccgtttcattgttaggtggaacacctagaatgcctttg |
155 |
Q |
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| T |
9891419 |
agtgagtaagaatacttttcattatagggtaaaactagtgaacatctcctagttattagtggctgtttcattgttaggtggaacacctagaatgcctttg |
9891320 |
T |
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| Q |
156 |
tttaattttcgtcattgtattcaggctgcgaattct |
191 |
Q |
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| T |
9891319 |
tctaattttcgtcattgttttcaggctgcgaattct |
9891284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 31253586 - 31253487
Alignment:
| Q |
93 |
agtaacacctcctagttattagtggccgtttcattgttaggtggaacacctagaatgcctttgtttaattttcgtcattgtattcaggctgcgaattctg |
192 |
Q |
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| T |
31253586 |
agtaaaacctcctagttattagtggctgtttcattgttaggtggaacacctggaatgcctttgtctaattttcgtcgttgttttcaggctgcaaattctg |
31253487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 57 - 192
Target Start/End: Complemental strand, 31236971 - 31236840
Alignment:
| Q |
57 |
agtgagtaagaatacttttcattatagggcaacactagt-aacacctcctagttattagtggccgtttcattgttaggtggaacacctagaatgcctttg |
155 |
Q |
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| T |
31236971 |
agtgagtaaaaatacttttcattatagggcaaaaatagttaacacca---agttattagtggctgtttcattgttaggtggaac--ctaagatgcctttg |
31236877 |
T |
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| Q |
156 |
tttaattttcgtcattgtattcaggctgcgaattctg |
192 |
Q |
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| T |
31236876 |
tctaattttcgtcgttgttttcaggctgcgaattctg |
31236840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 31003743 - 31003820
Alignment:
| Q |
107 |
gttattagtggccgtttcattgttaggtggaacacctagaatgcctttgtttaattttcgtcattgtattcaggctgc |
184 |
Q |
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| T |
31003743 |
gttattagtggctgtttcactgttagatagaacacctagaatgaattggtctaatatttggcattgttttcaggctgc |
31003820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 442523 - 442579
Alignment:
| Q |
136 |
gaacacctagaatgcctttgtttaattttcgtcattgtattcaggctgcgaattctg |
192 |
Q |
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| T |
442523 |
gaacacctagaatgcctttgtctaattttcgtcattgttttcaggctgcaaattctg |
442579 |
T |
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