View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15623_low_1 (Length: 533)
Name: NF15623_low_1
Description: NF15623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15623_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 6813110 - 6813624
Alignment:
| Q |
1 |
atgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
6813110 |
atgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtccccattatt |
6813209 |
T |
|
| Q |
101 |
tttgattgaaagtgagtcatcatctttgttctgctggcgaccatgaagacaaaagaatgcctctcttttgccatatacagctgccaagaaaagaggagtt |
200 |
Q |
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||| |||||| ||| | ||||||||||| ||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6813210 |
ttttcttgaaactgaataatcatctttgtcctgatgacgactatgaagacaaaagaatgcctctcttttgccatatacagctgccaagaaaagaggagtt |
6813309 |
T |
|
| Q |
201 |
tcgccttcgaaatttcgataggaaatgaggataggatctcttttagctatgttgttgcaaatttctacattcccaagctctgctgcaacatgaagaggag |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6813310 |
tcgccttcgaaatttcgacaggaaatgaggataggatctcttttagctatgttgttgcaaatttctacattcccaagctctgctgcaacatgaagaggag |
6813409 |
T |
|
| Q |
301 |
tatttccctttgagttttgcattcgtaggatgtcccaacacatgtctttgctgattttatctaacaaggttgtcacaaagagtgtttgcttcagatacac |
400 |
Q |
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| T |
6813410 |
tatttccctttgagttttgcattcgtaggatgtcccaacacatgtctttgctgattttatctaacaaggttgtcacaaagagtgtttgcttcagatacac |
6813509 |
T |
|
| Q |
401 |
agcaatgtgtaacaatgtgtcttctacttttgtgatcttggcctccaatactttagggnnnnnnncatatgactctataacttctctccattgccctcta |
500 |
Q |
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| T |
6813510 |
agcaatgtgtaacaatgtgtcttctacttttgtgatcttggcctccaatactttagggtttttttcatatgactctataacttctctccattgccctcta |
6813609 |
T |
|
| Q |
501 |
atggcatgattaaac |
515 |
Q |
| |
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||||||||||||||| |
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| T |
6813610 |
atggcatgattaaac |
6813624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 6819666 - 6820180
Alignment:
| Q |
1 |
atgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6819666 |
atgtttagacaaatgaaatgaacatatagaagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtt |
6819765 |
T |
|
| Q |
101 |
tttgattgaaagtgagtcatcatctttgttctgctggcgaccatgaagacaaaagaatgcctctcttttgccatatacagctgccaagaaaagaggagtt |
200 |
Q |
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| T |
6819766 |
tttgattgaaagtgagtcatcatctttgttctgttggtgaccatgaagacaaaagaaagcatctctttttccatgaacagctgccaagaaaagaggagtt |
6819865 |
T |
|
| Q |
201 |
tcgccttcgaaatttcgataggaaatgaggataggatctcttttagctatgttgttgcaaatttctacattcccaagctctgctgcaacatgaagaggag |
300 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || | |
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| T |
6819866 |
tcgccttcgaaatttcgatacgaaatgaggataggacatcttttagctatgttgttgcaaatgtctacattcccaagctctgcagcaacatgaagggggg |
6819965 |
T |
|
| Q |
301 |
tatttccctttgagttttgcattcgtaggatgtcccaacacatgtctttgctgattttatctaacaaggttgtcacaaagagtgtttgcttcagatacac |
400 |
Q |
| |
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|||||||||| ||||||||| ||| |||||||| | |||| ||||| || || ||||||||||||| |||||||||| |||||| ||| |||||| |
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| T |
6819966 |
tatttcccttcgagttttgcgttcttaggatgttcatgcacacgtcttggcatatgttatctaacaaggctgtcacaaagcatgtttggctcacatacac |
6820065 |
T |
|
| Q |
401 |
agcaatgtgtaacaatgtgtcttctacttttgtgatcttggcctccaatactttagggnnnnnnncatatgactctataacttctctccattgccctcta |
500 |
Q |
| |
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| T |
6820066 |
agcaatgtgtaacactgtgtcttctgcttctgtgatctttgcctccaatacttcaggggttttctcatatgactctaaaacttctctccattgccctctc |
6820165 |
T |
|
| Q |
501 |
atggcatgattaaac |
515 |
Q |
| |
|
|| |||||||||||| |
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| T |
6820166 |
attgcatgattaaac |
6820180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 39 - 515
Target Start/End: Original strand, 6834180 - 6834656
Alignment:
| Q |
39 |
caatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtttttgattgaaagtgagtcatcatctttgttctgctggc |
138 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
6834180 |
caatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtttttgattgaaagtgagtcatcatctttgttctgttcgt |
6834279 |
T |
|
| Q |
139 |
gaccatgaagacaaaagaatgcctctcttttgccatatacagctgccaagaaaagaggagtttcgccttcgaaatttcgataggaaatgaggataggatc |
238 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |
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| T |
6834280 |
gaccatgaagacaaaagaaagcatctctttttccatgaacagctgccaagaaaagaggagtctcgccttcaaaatttcgatatgaaatgaggatgggatc |
6834379 |
T |
|
| Q |
239 |
tcttttagctatgttgttgcaaatttctacattcccaagctctgctgcaacatgaagaggagtatttccctttgagttttgcattcgtaggatgtcccaa |
338 |
Q |
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|||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
6834380 |
tcttctggctatattgttgcaaatttctacattcccaagctctgctgcaacatgaagaggagtatttccctttgagttttgcattcttaggatgttccgg |
6834479 |
T |
|
| Q |
339 |
cacatgtctttgctgattttatctaacaaggttgtcacaaagagtgtttgcttcagatacacagcaatgtgtaacaatgtgtcttctacttttgtgatct |
438 |
Q |
| |
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||||| |||| ||| || ||||||||||||||||||||||| | |||||| ||| || | ||||||||||||| ||||||||| |||||||||||| |
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| T |
6834480 |
cacatatcttggcttatgttatctaacaaggttgtcacaaaaattgtttggctcacgtatatggcaatgtgtaacaccgtgtcttctgcttttgtgatct |
6834579 |
T |
|
| Q |
439 |
tggcctccaatactttagggnnnnnnncatatgactctataacttctctccattgccctctaatggcatgattaaac |
515 |
Q |
| |
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| ||||||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
6834580 |
ttgcctccaatacttcagggttttgctcatatgactctaaaacttctctccattgccctctcatggcatgattaaac |
6834656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 34778826 - 34778905
Alignment:
| Q |
76 |
aatgaagaatagtgtctccattgtttttg--attgaaagtgagtcatcatctttgttctgctggcgaccatgaagacaaa |
153 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||| ||||||||||||||| |
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| T |
34778826 |
aatgaagaatggtgtctccattgttttttttattgaaagtgaatcatcatctttattctgttggtgaccatgaagacaaa |
34778905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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