View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15624_high_10 (Length: 359)
Name: NF15624_high_10
Description: NF15624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15624_high_10 |
 | |
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| [»] chr8 (1 HSPs) |
| |
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| [»] scaffold0029 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 28961047 - 28961399
Alignment:
| Q |
7 |
gagatgaagaaagggaagctctacggtcttggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtg |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28961047 |
gagaagaagaaagggaagctctacggtcttggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtg |
28961146 |
T |
|
| Q |
107 |
aaggatcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggc |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28961147 |
aaggatcttcccggtagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggc |
28961246 |
T |
|
| Q |
207 |
tgttgtgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccctcgccggttttaagtccc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28961247 |
tgttgtgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccctcgccggttttaagtccc |
28961346 |
T |
|
| Q |
307 |
aatgttgagccttatccggtcgatagagatgaggaggaggatggtgtggatgg |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28961347 |
aatgttgagccttatccggtcgatagagatgaggaggaggatggtgtggatgg |
28961399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 5020642 - 5020298
Alignment:
| Q |
12 |
gaagaaagggaagctctacggtcttggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaagga |
111 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5020642 |
gaagaaaggaaagctctatggtcttggtaacttggccgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaagga |
5020543 |
T |
|
| Q |
112 |
tcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttg |
211 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5020542 |
tcttcccggcagcc--agctgacgccagagatgcgggagcttattcatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttg |
5020445 |
T |
|
| Q |
212 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccctcgccggttttaagtcccaatgt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5020444 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcgctcaatttaggcaagcacaagctcaagatccctcgccggttttaagtcccaatgt |
5020345 |
T |
|
| Q |
312 |
tgagccttatccggtcgatagagatgaggaggaggatggtgtggatg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5020344 |
tgagccttatccggtcgatagagatgaggaagaggatggtgtggatg |
5020298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 22122448 - 22122101
Alignment:
| Q |
12 |
gaagaaagggaa-gctctacggtcttggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaagg |
110 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22122448 |
gaagaaagggaaagctctatggtcttggtaacttggccgctaactatctggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaagg |
22122349 |
T |
|
| Q |
111 |
atcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgtt |
210 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22122348 |
atcctctcggcagcctgagctgacgccagagatgcgggagcttattcatagattggcacaagagcaattcgcgcagtagatggcgactcaagcggctgtt |
22122249 |
T |
|
| Q |
211 |
gtgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccctcgccggttttaagtcccaatg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
22122248 |
gtgcaagatttgctcaaccgccaaagatcttatgaggagcagctcgctcaatttaggcaagcacaggctcaagatccctcgccgattttaagtcccaatg |
22122149 |
T |
|
| Q |
311 |
ttgagccttatccggtcgatagagatgaggaggaggatggtgtggatg |
358 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22122148 |
ttgagccttattcggtcgatagagatgaggaggaggatggtgtggatg |
22122101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 358
Target Start/End: Original strand, 34630961 - 34631307
Alignment:
| Q |
12 |
gaagaaagggaagctctacggtcttggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaagga |
111 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34630961 |
gaagaagggtaagctctatggtcttggtaacttggccgctaactatcggccgggtagtgttgaatcaacgctcacatttacgctcaatcatggtgaagga |
34631060 |
T |
|
| Q |
112 |
tcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttg |
211 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
34631061 |
tcctcccggcagcctgagctgacgccagagatgcgggagcttataaatagattggcacaagagcaattcgcgcagcatatggcgactcaagcggcttttg |
34631160 |
T |
|
| Q |
212 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccctcgccggttttaagtcccaatgt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
34631161 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcgctcaatttaggcaagcacaggctcaagatccctcgccgattttaagtcccaatgt |
34631260 |
T |
|
| Q |
312 |
tgagccttatccggtcgatagagatgaggaggaggatggtgtggatg |
358 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34631261 |
tgagccttatccggtcgatacagatgaggaggaggatggtgtggatg |
34631307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 34371185 - 34371521
Alignment:
| Q |
12 |
gaagaaagggaagctctacggtcttggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaagga |
111 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34371185 |
gaagaagggaaagctctatggtcttggtaacttggccgctaactatcgggcgggtagtgttgcatcaacactcacatttacgctcaatcatggtgaagga |
34371284 |
T |
|
| Q |
112 |
tcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttg |
211 |
Q |
| |
|
|| ||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
34371285 |
tcctcctggcagcctgagctgacgccaaagatgcgggagcttattcatagattggcaaaagagaaatttgcgcagcagatggcgactcaagcggctattg |
34371384 |
T |
|
| Q |
212 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccctcgccggttttaagtcccaatgt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
34371385 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcgctcaatttaggcaagcacaggctcaagatccctcgccggttttaagtctcaatgt |
34371484 |
T |
|
| Q |
312 |
tgagccttatccggtcgatagagatgaggaggaggat |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34371485 |
tgagccttatccggtcgatagagatgaggaggaggat |
34371521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 274
Target Start/End: Complemental strand, 40542913 - 40542707
Alignment:
| Q |
68 |
gtgttgcatcaacgctcacatttacgctcaatcatggtgaaggatcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggc |
167 |
Q |
| |
|
|||||||| |||| |||| | |||| || ||||||||||||||||| | || ||||||| ||||| | || ||| | || |||||| | |||||| | |
|
|
| T |
40542913 |
gtgttgcagcaactctcagacttacccttaatcatggtgaaggatccttccaacagcctgcactgacctctgaaatgtgtgaccttattcaaagattgac |
40542814 |
T |
|
| Q |
168 |
acaagagcaattcgcgcagcagatggcgactcaagcggctgttgtgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttagg |
267 |
Q |
| |
|
|||||||| || | || || ||||||| ||| | ||| ||||||||||||||||| | ||| ||| || ||||||||||| || ||||| |||||| |
|
|
| T |
40542813 |
tcaagagcagctcacacaacaaatggcgagtcacgaggccgttgtgcaagatttgcttagccgacaacgaaaatatgaggagcaactgactcagtttagg |
40542714 |
T |
|
| Q |
268 |
caagcac |
274 |
Q |
| |
|
||||||| |
|
|
| T |
40542713 |
caagcac |
40542707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 5598620 - 5598274
Alignment:
| Q |
12 |
gaagaaagggaagctctacggtcttggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaagga |
111 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5598620 |
gaagaaaggaaagctctatggtcttggtaacttggccgctaactatcgggcgggtagtgttgcatcaacactcacatttacgctcaatcatggtgaagga |
5598521 |
T |
|
| Q |
112 |
tcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttg |
211 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5598520 |
tcctcccggcagcctgagctaacgccagagatgcgggagcttattcatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttg |
5598421 |
T |
|
| Q |
212 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccctcgccggttttaagtcccaatgt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| | |
|
|
| T |
5598420 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcgctcaatttaggcaagcacaggctcaagatccctcgctggttttaagtcccaatat |
5598321 |
T |
|
| Q |
312 |
tgagccttatccggtcgatagagatgaggaggaggatggtgtggatg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5598320 |
tgagccttatccggtcgatagagatgaggaggaggatggtgtggatg |
5598274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 7626273 - 7626618
Alignment:
| Q |
12 |
gaagaaagggaagctctacggtcttggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaagga |
111 |
Q |
| |
|
|||||| || || ||||| ||||||||||||||||| ||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7626273 |
gaagaagggtaaactctatggtcttggtaacttggccgctaactgtcggccgggtagtgttgaatcaacgctcacatttacgctcaatcatggtgaagga |
7626372 |
T |
|
| Q |
112 |
tcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttg |
211 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7626373 |
tcctcccgacagcctgagctgacgccagagatgcgggagcttataaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttg |
7626472 |
T |
|
| Q |
212 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccctcgccggttttaagtcccaatgt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
7626473 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcgctcaatttaggcaagcacaggctcaagatccctcgccgattttaagtcccaatgt |
7626572 |
T |
|
| Q |
312 |
tgagccttatccggtcgatagagatgaggaggaggatggtgtggat |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7626573 |
tgagccttatccggtcgatagagatgaggaggaggatggtgtggat |
7626618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 12 - 290
Target Start/End: Original strand, 10997947 - 10998225
Alignment:
| Q |
12 |
gaagaaagggaagctctacggtcttggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaagga |
111 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| || |||||||| || |||||||||||||||||| |||| | | || |||||||| ||||||||| |
|
|
| T |
10997947 |
gaagaaaggaaagctctatggtcttggtaacttagccgctaactaccgaaagggtagtgttgcatcaaccctcagactaaccctcaatcagggtgaagga |
10998046 |
T |
|
| Q |
112 |
tcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttg |
211 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||| ||||||||||||| | |||||| || ||| |
|
|
| T |
10998047 |
acctcccagcagcctgagctgacgccagagatgcgggagctttttcatagattgacacaagagcagttcacgcagcagatggcaagtcaagcagcccttg |
10998146 |
T |
|
| Q |
212 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccctc |
290 |
Q |
| |
|
|||||||| || | ||||||||||||| || |||||||| || ||| ||| ||||||||| ||||||| |||||| |
|
|
| T |
10998147 |
tgcaagatatgattaaccgccaaagattatacgaggagcatctggctcggcttacgcaagcacaggctcaagctccctc |
10998225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 68 - 251
Target Start/End: Complemental strand, 7781849 - 7781666
Alignment:
| Q |
68 |
gtgttgcatcaacgctcacatttacgctcaatcatggtgaaggatcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggc |
167 |
Q |
| |
|
|||||||| |||| |||| |||||| || ||||||||||||||||| |||| |||||||| |||||| || |||||||| || |||||| | |||||| | |
|
|
| T |
7781849 |
gtgttgcaacaaccctcagatttacccttaatcatggtgaaggatcctcccagcagcctgcgctgacccctgagatgcgtgaccttattcaaagattgac |
7781750 |
T |
|
| Q |
168 |
acaagagcaattcgcgcagcagatggcgactcaagcggctgttgtgcaagatttgctcaaccgccaaagatcttatgaggagca |
251 |
Q |
| |
|
|||||||| || | ||||| ||||||| || | ||| ||||| |||||||| || | ||||||| || | ||||||||||| |
|
|
| T |
7781749 |
tcaagagcagctcacccagcaaatggcgagacacgaggccgttgtacaagattttcttagccgccaacgaacatatgaggagca |
7781666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 322
Target Start/End: Complemental strand, 51269334 - 51269302
Alignment:
| Q |
290 |
cgccggttttaagtcccaatgttgagccttatc |
322 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
51269334 |
cgccggttttaagtccgaatgttgagccttatc |
51269302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 89 - 349
Target Start/End: Complemental strand, 6052681 - 6052409
Alignment:
| Q |
89 |
ttacgctcaatcatggtgaaggatcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagca |
188 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| | ||||||||| |
|
|
| T |
6052681 |
ttaccctcaatcatggtgaaggattctcccagcagcctgagctgaccccagagatgcgggagcttattcatagattgacacaagagcagtccgcgcagca |
6052582 |
T |
|
| Q |
189 |
gatggcgactcaagcggctgttgtgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccc |
288 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||||||| |||||||||||| |
|
|
| T |
6052581 |
aatggcgagtcaagcggccgttgagcaagatttgcttaaccgccaaagatcatatgaggagcagctggctcagtttaggcaagcacatgctcaagatccc |
6052482 |
T |
|
| Q |
289 |
t------------cgccggttttaagtcccaatgttgagccttatccggtcgatagagatgaggaggaggatg |
349 |
Q |
| |
|
| ||| | |||||||||||||||||||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
6052481 |
tcccacactagagcgctgtttttaagtcccaatgttgagccttatccagttgatagagatgaggaggatgatg |
6052409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 7430655 - 7430377
Alignment:
| Q |
12 |
gaagaaagggaagctctacggtcttggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaagga |
111 |
Q |
| |
|
||||||||| |||||||| | || ||||||||| ||||||||||| ||| ||| ||||||||||||||| |||| | | || |||||||||||||||||| |
|
|
| T |
7430655 |
gaagaaaggaaagctctatgttcgtggtaacttagctgctaactaccggacggatagtgttgcatcaaccctcagactaaccctcaatcatggtgaagga |
7430556 |
T |
|
| Q |
112 |
tcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttg |
211 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||||| ||||||||| ||| |
|
|
| T |
7430555 |
acctcccagcagcctgagctgacgccagagatgcgggagcttattcatagattgacacaagagcagttcacgcagcagatggcgagtcaagcggcccttg |
7430456 |
T |
|
| Q |
212 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccctc |
290 |
Q |
| |
|
||||| ||||| | ||||||||||||| || ||||||||||| ||| ||| ||||||||| |||||||||||||| |
|
|
| T |
7430455 |
tgcaatatttgattaaccgccaaagattatacgaggagcagctggctcggcttacgcaagcacaggctcaagatccctc |
7430377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 14606438 - 14606759
Alignment:
| Q |
12 |
gaagaaagggaagctctacggtcttggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaagga |
111 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||| || |||||||| ||| || ||||||||||||||| |||| | | || |||||||||||||||||| |
|
|
| T |
14606438 |
gaagaaaggaaagctctatggtcttggaaacttagccgctaactaccggaaggatagtgttgcatcaaccctcagactaaccctcaatcatggtgaagga |
14606537 |
T |
|
| Q |
112 |
tcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttg |
211 |
Q |
| |
|
|| |||| ||||| ||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||| | ||||||| | ||| |
|
|
| T |
14606538 |
tcctcccagcagcatgagctgacaccagagatgcgggagcttattcatagattgacacaagagcagttcacgcagcagatggcaagtcaagcgacccttg |
14606637 |
T |
|
| Q |
212 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccct----------cgccggttttaa |
301 |
Q |
| |
|
|| ||||||||| |||| ||||||||| || ||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
14606638 |
tggcagatttgcttaacctccaaagatcatacgaggagcagctggctcagcttaggcaagcacaggctcaagatccctcccactagagcgccggttttaa |
14606737 |
T |
|
| Q |
302 |
gtcccaatgttgagccttatcc |
323 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14606738 |
gtcccaatgttgagccttatcc |
14606759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 53062 - 52784
Alignment:
| Q |
12 |
gaagaaagggaagctctacggtcttggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaagga |
111 |
Q |
| |
|
||||||||| |||||||| || ||||||||||| || |||||||||||| ||| |||||||||||||| |||| | | || |||||||| ||||||||| |
|
|
| T |
53062 |
gaagaaaggaaagctctatggccttggtaacttagccgctaactatcggaagggaagtgttgcatcaaccctcagactaaccctcaatcagggtgaagga |
52963 |
T |
|
| Q |
112 |
tcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttg |
211 |
Q |
| |
|
| |||| ||||||| ||||||||||||||||||||||||| ||| |||||||| |||||||||| ||| ||||||||||||| | |||||| || ||| |
|
|
| T |
52962 |
acctcccagcagcctcagctgacgccagagatgcgggagctcattcatagattgtcacaagagcagttctcgcagcagatggcaagtcaagcagcccttg |
52863 |
T |
|
| Q |
212 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccctc |
290 |
Q |
| |
|
||||||| ||| | ||||||||||||| || ||||||||||| |||| | ||| ||||||||| | ||||| |||||| |
|
|
| T |
52862 |
tgcaagaattgattaaccgccaaagattatacgaggagcagctgactcgacttatgcaagcacaggatcaagctccctc |
52784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 52772 - 52739
Alignment:
| Q |
290 |
cgccggttttaagtcccaatgttgagccttatcc |
323 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
52772 |
cgccggttttaagtccgaatgttgagccttatcc |
52739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 290
Target Start/End: Original strand, 22015859 - 22016137
Alignment:
| Q |
12 |
gaagaaagggaagctctacggtcttggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaagga |
111 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| || |||||||| ||| ||| |||||||||||||| |||| | | || |||||||| ||||||||| |
|
|
| T |
22015859 |
gaagaaaggaaagctctatggtcttggtaacttagccgctaactaccggaagggcagtgttgcatcaaccctcagactaaccctcaatcagggtgaagga |
22015958 |
T |
|
| Q |
112 |
tcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttg |
211 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||| | |||||||||| | |||||| | ||| |
|
|
| T |
22015959 |
acctcccagcagcctgagctgacgccagagatgcgggagcttattcatagattgacacaagagcagttcacacagcagatggaaagtcaagcatcccttg |
22016058 |
T |
|
| Q |
212 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccctc |
290 |
Q |
| |
|
||||||||||| | |||| |||||||| || ||||||||||| ||| ||| ||||||||| ||||||| |||||| |
|
|
| T |
22016059 |
tgcaagatttgattaaccaccaaagattatacgaggagcagctggctcggcttacgcaagcacaggctcaagctccctc |
22016137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 290
Target Start/End: Original strand, 44325967 - 44326245
Alignment:
| Q |
12 |
gaagaaagggaagctctacggtcttggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaagga |
111 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| || |||||||| ||| ||| |||||||||||||| |||| | | || |||||||| ||||||||| |
|
|
| T |
44325967 |
gaagaaaggaaagctctatggtcttggtaacttagccgctaactaccggaagggcagtgttgcatcaaccctcagactaaccctcaatcagggtgaagga |
44326066 |
T |
|
| Q |
112 |
tcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttg |
211 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||| | |||||||||| | |||||| | ||| |
|
|
| T |
44326067 |
acctcccagcagcctgagctgacgccagagatgcgggagcttattcatagattgacacaagagcagttcacacagcagatggaaagtcaagcatcccttg |
44326166 |
T |
|
| Q |
212 |
tgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttaggcaagcacaagctcaagatccctc |
290 |
Q |
| |
|
||||||||||| | |||| |||||||| || ||||||||||| ||| ||| ||||||||| ||||||| |||||| |
|
|
| T |
44326167 |
tgcaagatttgattaaccaccaaagattatacgaggagcagctggctcggcttacgcaagcacaggctcaagctccctc |
44326245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 275
Target Start/End: Complemental strand, 6660054 - 6659819
Alignment:
| Q |
37 |
ggtaacttggctgctaactatcgggcgggtagtgttgcatcaacgctcacatttacgctcaatcatggtgaaggatcttcccggcagcctgagctgacgc |
136 |
Q |
| |
|
||||||||||| |||||||| ||| |||| |||||| |||| |||| |||||| || |||||||| |||||||| |||| |||||||| ||||| | |
|
|
| T |
6660054 |
ggtaacttggccgctaactaccggaagggt---gttgcaacaaccctcagatttacccttaatcatggcgaaggatcctcccagcagcctgcactgaccc |
6659958 |
T |
|
| Q |
137 |
cagagatgcgggagcttattaatagattggcacaagagcaattcgcgcagcagatggcgactcaagcggctgttgtgcaagatttgctcaaccgccaaag |
236 |
Q |
| |
|
| |||||||| || |||||| | |||||| | |||||||| || | ||||| ||||||| || | ||| ||||| ||||||||||| | ||||||| | |
|
|
| T |
6659957 |
ctgagatgcgtgaccttattcaaagattgactcaagagcagctcacccagcaaatggcgagacatgaggccgttgtacaagatttgcttagccgccaacg |
6659858 |
T |
|
| Q |
237 |
atcttatgaggagcagctcactcaatttaggcaagcaca |
275 |
Q |
| |
|
| | ||||||||||| | |||||||| |||||||||| |
|
|
| T |
6659857 |
aacatatgaggagcaattggctcaatttcggcaagcaca |
6659819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 68 - 275
Target Start/End: Original strand, 23450146 - 23450353
Alignment:
| Q |
68 |
gtgttgcatcaacgctcacatttacgctcaatcatggtgaaggatcttcccggcagcctgagctgacgccagagatgcgggagcttattaatagattggc |
167 |
Q |
| |
|
|||||||| |||| |||| |||||| || |||||||| |||||||| |||| |||||||| ||||| || ||||||| || |||||| | |||||| | |
|
|
| T |
23450146 |
gtgttgcaacaaccctcagatttacccttaatcatggcgaaggatcctcccagcagcctgcactgacccctgagatgcatgaccttattcaaagattgac |
23450245 |
T |
|
| Q |
168 |
acaagagcaattcgcgcagcagatggcgactcaagcggctgttgtgcaagatttgctcaaccgccaaagatcttatgaggagcagctcactcaatttagg |
267 |
Q |
| |
|
|||||||| || | ||||| ||||||| || | ||| ||||| ||||||||||| | ||||||| || | ||||||||||| || |||||||| || |
|
|
| T |
23450246 |
tcaagagcagctcacccagcaaatggcgagacatgaggccgttgtacaagatttgcttagccgccaacgaacatatgaggagcaactggctcaatttcgg |
23450345 |
T |
|
| Q |
268 |
caagcaca |
275 |
Q |
| |
|
|||||||| |
|
|
| T |
23450346 |
caagcaca |
23450353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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