View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15624_high_13 (Length: 344)
Name: NF15624_high_13
Description: NF15624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15624_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 21 - 324
Target Start/End: Complemental strand, 3745109 - 3744806
Alignment:
| Q |
21 |
gacatcatcacacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcagaattcatacgtg |
120 |
Q |
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| T |
3745109 |
gacatcatcacacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcagaattcatacgtg |
3745010 |
T |
|
| Q |
121 |
ttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgcgcttgtgataagcggagagaggaagagggaagaag |
220 |
Q |
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| T |
3745009 |
ttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaagagggaagaag |
3744910 |
T |
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| Q |
221 |
agaaagaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttc |
320 |
Q |
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| T |
3744909 |
agaaagaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttc |
3744810 |
T |
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| Q |
321 |
tgct |
324 |
Q |
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|||| |
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| T |
3744809 |
tgct |
3744806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 112 - 303
Target Start/End: Complemental strand, 48303219 - 48303031
Alignment:
| Q |
112 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgcgcttgtgataagcggagagaggaaga |
211 |
Q |
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| T |
48303219 |
tcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgcttctgataagcggtgaaaggaaga |
48303120 |
T |
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| Q |
212 |
gggaagaagagaaagaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgct |
303 |
Q |
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| T |
48303119 |
gagaagaagagaaagaaggtggt---aaatatttgaagatggaaagaagggttggtaagtttatgaggaaatttgtgttaccagagaatgct |
48303031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 10462162 - 10462270
Alignment:
| Q |
112 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgcgcttgtgataagcggagagaggaaga |
211 |
Q |
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|||| ||| |||| ||| ||| |||| |||||||||||||| ||||| |||||| |||| ||||||||||| | | ||||||||| ||| |||||||||| |
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| T |
10462162 |
tcattcgtattcgagatggacttgccgggattgaaatctggtgatatcaaggttgaggttgaagatgataaagtggttgtgataaccggcgagaggaaga |
10462261 |
T |
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| Q |
212 |
gggaagaag |
220 |
Q |
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||||||||| |
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| T |
10462262 |
gggaagaag |
10462270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 220
Target Start/End: Complemental strand, 10539977 - 10539854
Alignment:
| Q |
97 |
aaggaagatcagaattcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgcgcttgtgataa |
196 |
Q |
| |
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|||||| |||| || || |||||||||| || || |||| ||| ||||||||| ||||| |||||| |||| ||||||||||| | | ||||||||| |
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| T |
10539977 |
aaggaatatcaaaactcgtacgtgttcgagacagatatgctgggaatgaaatctgatgatatcaaggttgaggttgaagatgataatgtggttgtgataa |
10539878 |
T |
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| Q |
197 |
gcggagagaggaagagggaagaag |
220 |
Q |
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||| ||||||||||||||||||| |
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| T |
10539877 |
ccggcgagaggaagagggaagaag |
10539854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 10543530 - 10543464
Alignment:
| Q |
188 |
ttgtgataagcggagagaggaagagggaagaagagaaagaaggtggtgcaaagtatttgagaatgga |
254 |
Q |
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|||||||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
10543530 |
ttgtgataagtggagaaaggaagagggaagaagaagtagaagaaggtgttaagtatttgagaatgga |
10543464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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