View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15624_high_21 (Length: 306)

Name: NF15624_high_21
Description: NF15624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15624_high_21
NF15624_high_21
[»] chr1 (42 HSPs)
chr1 (19-303)||(32882489-32882767)
chr1 (29-306)||(34774984-34775262)
chr1 (29-306)||(27102304-27102572)
chr1 (29-304)||(10785152-10785426)
chr1 (30-258)||(46768343-46768566)
chr1 (40-205)||(16148990-16149155)
chr1 (29-198)||(32863237-32863406)
chr1 (57-306)||(31290740-31290987)
chr1 (100-306)||(16577374-16577579)
chr1 (239-306)||(6583117-6583184)
chr1 (29-236)||(11439711-11439919)
chr1 (185-306)||(27031687-27031806)
chr1 (213-293)||(52278430-52278509)
chr1 (235-306)||(16147671-16147742)
chr1 (147-261)||(46692627-46692739)
chr1 (180-274)||(7857800-7857893)
chr1 (29-85)||(9313031-9313087)
chr1 (118-274)||(46814246-46814401)
chr1 (147-293)||(5459289-5459434)
chr1 (147-261)||(24449738-24449850)
chr1 (180-270)||(24659080-24659168)
chr1 (31-140)||(2987816-2987924)
chr1 (147-260)||(5389230-5389340)
chr1 (29-81)||(376497-376549)
chr1 (29-89)||(38544407-38544467)
chr1 (55-142)||(6582968-6583055)
chr1 (40-114)||(52278589-52278661)
chr1 (225-306)||(41126362-41126443)
chr1 (208-303)||(9313179-9313272)
chr1 (30-77)||(42374526-42374573)
chr1 (29-146)||(46603636-46603751)
chr1 (29-91)||(41126142-41126204)
chr1 (30-79)||(50588964-50589014)
chr1 (29-74)||(17033939-17033984)
chr1 (147-260)||(41920619-41920730)
chr1 (29-76)||(37200485-37200532)
chr1 (107-198)||(38548845-38548934)
chr1 (31-85)||(38546876-38546930)
chr1 (39-79)||(19598990-19599031)
chr1 (94-222)||(38544511-38544637)
chr1 (158-198)||(24684310-24684350)
chr1 (31-91)||(27905760-27905819)
[»] chr2 (35 HSPs)
chr2 (29-306)||(10173270-10173545)
chr2 (29-304)||(7696077-7696351)
chr2 (47-306)||(37770359-37770610)
chr2 (110-306)||(16952154-16952350)
chr2 (110-306)||(17022819-17023015)
chr2 (110-306)||(17060125-17060321)
chr2 (29-306)||(34230314-34230591)
chr2 (29-174)||(4974990-4975135)
chr2 (29-174)||(4992898-4993043)
chr2 (29-247)||(12342992-12343195)
chr2 (118-258)||(387338-387476)
chr2 (122-306)||(14106305-14106488)
chr2 (122-261)||(7460836-7460974)
chr2 (127-274)||(7874438-7874583)
chr2 (118-306)||(5254371-5254553)
chr2 (147-293)||(39338674-39338818)
chr2 (111-306)||(1269596-1269787)
chr2 (29-105)||(13337565-13337640)
chr2 (154-261)||(17116694-17116800)
chr2 (147-293)||(10524228-10524373)
chr2 (29-191)||(41113431-41113590)
chr2 (29-76)||(22884805-22884852)
chr2 (29-75)||(33788316-33788362)
chr2 (20-85)||(4472277-4472342)
chr2 (29-76)||(27740331-27740378)
chr2 (30-200)||(29139642-29139813)
chr2 (29-89)||(2063208-2063269)
chr2 (178-274)||(14405345-14405441)
chr2 (47-306)||(41086513-41086765)
chr2 (27-150)||(29997215-29997337)
chr2 (29-79)||(25504579-25504629)
chr2 (29-79)||(24165867-24165917)
chr2 (35-73)||(29487447-29487485)
chr2 (29-90)||(16952035-16952096)
chr2 (29-90)||(17022700-17022761)
[»] chr5 (32 HSPs)
chr5 (30-298)||(26045655-26045924)
chr5 (31-268)||(13953941-13954178)
chr5 (29-306)||(26405239-26405513)
chr5 (27-266)||(14302133-14302373)
chr5 (39-304)||(8297583-8297851)
chr5 (29-159)||(30097593-30097723)
chr5 (29-225)||(7682747-7682943)
chr5 (118-260)||(7161795-7161935)
chr5 (73-255)||(21398054-21398236)
chr5 (29-297)||(25992129-25992391)
chr5 (51-152)||(7195014-7195114)
chr5 (29-94)||(24071952-24072017)
chr5 (29-177)||(10174923-10175069)
chr5 (51-191)||(33109913-33110050)
chr5 (147-261)||(18593404-18593516)
chr5 (208-306)||(7195112-7195208)
chr5 (48-259)||(7391709-7391917)
chr5 (31-79)||(31742504-31742552)
chr5 (28-298)||(33258579-33258842)
chr5 (31-142)||(31721950-31722058)
chr5 (29-79)||(8731278-8731328)
chr5 (159-261)||(34378259-34378359)
chr5 (122-175)||(5656878-5656931)
chr5 (30-71)||(27713421-27713462)
chr5 (170-261)||(698522-698611)
chr5 (118-200)||(18313425-18313504)
chr5 (48-116)||(37108103-37108170)
chr5 (31-90)||(25657813-25657871)
chr5 (147-265)||(29087637-29087752)
chr5 (29-143)||(5187219-5187332)
chr5 (39-73)||(23426646-23426680)
chr5 (39-79)||(6159827-6159866)
[»] chr8 (30 HSPs)
chr8 (29-268)||(10248256-10248497)
chr8 (20-306)||(12197757-12198036)
chr8 (20-306)||(12442185-12442464)
chr8 (34-205)||(17656432-17656603)
chr8 (31-196)||(8862314-8862481)
chr8 (208-303)||(17656873-17656967)
chr8 (74-260)||(43312375-43312558)
chr8 (154-293)||(31207177-31207315)
chr8 (118-250)||(20138598-20138726)
chr8 (31-140)||(41790961-41791070)
chr8 (147-261)||(41893210-41893322)
chr8 (147-261)||(37986666-37986778)
chr8 (156-298)||(38577606-38577748)
chr8 (184-274)||(15821224-15821313)
chr8 (31-79)||(30235809-30235857)
chr8 (156-293)||(9519627-9519764)
chr8 (29-76)||(17720398-17720444)
chr8 (242-300)||(8862505-8862563)
chr8 (96-142)||(30235889-30235935)
chr8 (159-298)||(35816066-35816201)
chr8 (147-293)||(24995202-24995348)
chr8 (29-76)||(9831694-9831741)
chr8 (68-174)||(22325826-22325931)
chr8 (154-260)||(34388822-34388925)
chr8 (31-76)||(5215000-5215044)
chr8 (184-261)||(12898120-12898195)
chr8 (147-200)||(16457283-16457336)
chr8 (118-205)||(36631039-36631123)
chr8 (41-89)||(5221506-5221553)
chr8 (43-79)||(10552609-10552645)
[»] chr7 (32 HSPs)
chr7 (60-302)||(24324520-24324761)
chr7 (39-306)||(3478465-3478729)
chr7 (29-306)||(6716427-6716705)
chr7 (169-306)||(8745266-8745405)
chr7 (29-200)||(33719185-33719355)
chr7 (147-293)||(47325693-47325838)
chr7 (44-200)||(1321014-1321169)
chr7 (180-306)||(34390077-34390202)
chr7 (147-261)||(31971942-31972054)
chr7 (60-154)||(6492852-6492946)
chr7 (147-260)||(38306423-38306534)
chr7 (118-260)||(3867278-3867415)
chr7 (29-145)||(16828791-16828906)
chr7 (94-306)||(23983320-23983530)
chr7 (29-197)||(42532950-42533117)
chr7 (118-306)||(35745601-35745792)
chr7 (118-250)||(44353345-44353473)
chr7 (184-260)||(6585043-6585118)
chr7 (30-134)||(16954775-16954878)
chr7 (147-293)||(5860096-5860241)
chr7 (29-74)||(28534195-28534240)
chr7 (29-76)||(13312180-13312227)
chr7 (87-146)||(28534277-28534336)
chr7 (30-80)||(36674809-36674859)
chr7 (29-64)||(22567783-22567818)
chr7 (23-89)||(9107481-9107547)
chr7 (39-85)||(26385858-26385903)
chr7 (27-80)||(8745469-8745521)
chr7 (29-85)||(25438691-25438748)
chr7 (243-304)||(42533158-42533219)
chr7 (29-89)||(23983574-23983634)
chr7 (154-293)||(37795117-37795255)
[»] scaffold0050 (1 HSPs)
scaffold0050 (29-306)||(36822-37097)
[»] chr4 (35 HSPs)
chr4 (29-305)||(16832711-16832988)
chr4 (41-306)||(19311069-19311342)
chr4 (47-306)||(41117677-41117935)
chr4 (112-306)||(48098446-48098641)
chr4 (31-306)||(38636927-38637201)
chr4 (30-290)||(49747657-49747917)
chr4 (156-306)||(31050478-31050627)
chr4 (31-306)||(19814910-19815188)
chr4 (93-298)||(25753293-25753500)
chr4 (140-306)||(35341141-35341304)
chr4 (141-300)||(19673219-19673377)
chr4 (47-199)||(39420745-39420896)
chr4 (29-274)||(22810864-22811096)
chr4 (208-304)||(49528187-49528282)
chr4 (182-305)||(2825899-2826020)
chr4 (29-85)||(28967209-28967265)
chr4 (27-80)||(48098645-48098698)
chr4 (239-306)||(39420914-39420981)
chr4 (67-200)||(53823151-53823281)
chr4 (232-306)||(53823314-53823389)
chr4 (148-261)||(8255188-8255299)
chr4 (148-261)||(8268606-8268717)
chr4 (29-78)||(46487621-46487670)
chr4 (25-75)||(35336914-35336964)
chr4 (96-142)||(43373864-43373910)
chr4 (29-81)||(42719494-42719546)
chr4 (147-258)||(8705952-8706061)
chr4 (29-96)||(25754199-25754265)
chr4 (31-85)||(38930122-38930177)
chr4 (29-75)||(35947998-35948044)
chr4 (48-133)||(2061542-2061627)
chr4 (141-214)||(20464796-20464869)
chr4 (31-71)||(19432386-19432426)
chr4 (155-235)||(30964624-30964702)
chr4 (31-71)||(43373784-43373824)
[»] scaffold0063 (1 HSPs)
scaffold0063 (29-306)||(58240-58518)
[»] chr3 (42 HSPs)
chr3 (29-304)||(4170860-4171134)
chr3 (29-303)||(37123497-37123760)
chr3 (29-299)||(50518780-50519047)
chr3 (149-306)||(14879549-14879708)
chr3 (156-274)||(23328167-23328284)
chr3 (156-306)||(45398911-45399060)
chr3 (43-305)||(28937427-28937681)
chr3 (156-304)||(40023389-40023536)
chr3 (118-261)||(43012536-43012677)
chr3 (31-306)||(7104956-7105232)
chr3 (45-200)||(48893060-48893214)
chr3 (32-200)||(14194154-14194317)
chr3 (29-306)||(25647799-25648073)
chr3 (29-134)||(14280240-14280343)
chr3 (118-261)||(53248061-53248200)
chr3 (27-91)||(46358071-46358135)
chr3 (147-293)||(47235826-47235971)
chr3 (31-85)||(14893264-14893318)
chr3 (148-293)||(20611911-20612054)
chr3 (31-91)||(1652569-1652628)
chr3 (94-198)||(25594304-25594406)
chr3 (156-306)||(39021094-39021245)
chr3 (136-259)||(9583852-9583972)
chr3 (118-261)||(19176665-19176806)
chr3 (29-200)||(33143643-33143812)
chr3 (49-114)||(41039463-41039527)
chr3 (154-261)||(2392321-2392426)
chr3 (154-261)||(2394085-2394190)
chr3 (46-178)||(12086483-12086615)
chr3 (147-261)||(30352249-30352359)
chr3 (29-89)||(32010117-32010177)
chr3 (29-71)||(14754974-14755016)
chr3 (96-139)||(1652648-1652691)
chr3 (182-261)||(17551113-17551190)
chr3 (147-214)||(34475564-34475631)
chr3 (240-306)||(14755166-14755232)
chr3 (47-85)||(25594217-25594255)
chr3 (148-304)||(37998971-37999125)
chr3 (109-154)||(32010027-32010072)
chr3 (149-293)||(45163983-45164126)
chr3 (94-146)||(27399218-27399270)
chr3 (29-85)||(37998900-37998956)
[»] chr6 (14 HSPs)
chr6 (29-306)||(20701488-20701771)
chr6 (29-306)||(15120293-15120565)
chr6 (147-302)||(3880404-3880562)
chr6 (29-91)||(17278153-17278215)
chr6 (159-268)||(13423603-13423716)
chr6 (29-103)||(6860348-6860423)
chr6 (95-304)||(32935099-32935305)
chr6 (147-261)||(10541993-10542105)
chr6 (154-261)||(14663238-14663343)
chr6 (27-142)||(26215711-26215826)
chr6 (27-85)||(3880301-3880359)
chr6 (31-71)||(12794465-12794505)
chr6 (48-90)||(20500282-20500323)
chr6 (31-71)||(26534424-26534464)
[»] scaffold1384 (1 HSPs)
scaffold1384 (34-205)||(1347-1522)
[»] scaffold0200 (1 HSPs)
scaffold0200 (111-306)||(19496-19687)
[»] scaffold0119 (1 HSPs)
scaffold0119 (111-306)||(41915-42106)
[»] scaffold1613 (2 HSPs)
scaffold1613 (29-89)||(686-746)
scaffold1613 (94-222)||(790-916)
[»] scaffold0343 (1 HSPs)
scaffold0343 (141-261)||(5867-5985)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 32882767 - 32882489
Alignment:
Q  19 ggaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatata 118  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||    
T  32882767 ggaatcagaaaatacaaactaaaggcgccgtatataggcagaacacccgaaaataaacaccctaaaagacacccccgaggacaacacccaccaaaatata 32882668  T
Q  119 catcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactca-ccaccaacgaacacccctc 217  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||    
T  32882667 catcaccgcctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcaccccccaacgaacacccctc 32882568  T
Q  218 aaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacct 303  Q
    ||||        ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||| ||||| ||||||||    
T  32882567 aaaa-------ccccagtcctcaacaccaaagctgagccacattcgaaaagctcctgaccgaaagatcattaagctttcaccacct 32882489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 29 - 306
Target Start/End: Complemental strand, 34775262 - 34774984
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||  |||||||||||| |||||||||| || ||| | ||    
T  34775262 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccttaaaaaataccaatgaggacaacacccaccaaaatacacgtcatcacc 34775163  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg-aacacccctcaaaattaaaa 227  Q
    |||||| ||||||||||| |||||||  |||||||| |||| |||| |||  |||| ||||||||||||||| |||| | ||||||| | |||| | |||    
T  34775162 taaaacagactccttcacgaaaacgacaactgtaaaaacgaaatcccacactacccgtcgtcactactcacc-ccaatgaaacacccgtaaaaaat-aaa 34775065  T
Q  228 ctcccagtcctcaacaccaaagctgagccacattc-gaaaagctcctagctgaaa-gatcattcagcttccaccacctctc 306  Q
    |||||| |||||||||||||||||||||||||| | ||||| |||||| ||||||  |||| |||||||||||||||||||    
T  34775064 ctcccaatcctcaacaccaaagctgagccacatccggaaaaactcctatctgaaacaatcaatcagcttccaccacctctc 34774984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 306
Target Start/End: Complemental strand, 27102572 - 27102304
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| |||||||||         | ||    
T  27102572 aatacaaacaaaaggtgccgtatataggcggaacacccgaaaataaacaccctaaaa-acacc-atgaggacaacacccaccaaaat---------cccc 27102484  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg----aacacccctcaaaatta 224  Q
    |||||| ||  | ||||| |||||   ||||||||| |||| |||||||| ||| ||||||||||||||||| |||| |    || ||||||||||| |     
T  27102483 taaaacagatactttcacgaaaacagccactgtaaaaacgaaatccaacaccactcatcgtcactactcacc-ccaaagaaaaaatacccctcaaaaatc 27102385  T
Q  225 aaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
     || ||||| |||| ||||| ||||||||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||    
T  27102384 caaatcccattcctgaacactaaagctgagccaca-acgaaacgctcctatctgaaagatcattcagcttccaccacctctc 27102304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 304
Target Start/End: Original strand, 10785152 - 10785426
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    |||||||||||||  ||||||| | || |||||||||| || ||||||||| ||||| |||||  |||||||||||| || ||||||| |  | | | |     
T  10785152 aatacaaactaaaaacgccgtacaaagtcggaacacccaaatataaacaccttaaaaaacacccttgaggacaacacccatcaaaatacatgttatcact 10785251  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccac-caacgaacacccctcaaaattaaaa 227  Q
    |||||| ||||||||||| |||||||   ||| ||| ||||||||||||  ||||||||||||||||||| | | |||  |||||||||||||| ||||     
T  10785252 taaaacagactccttcacgaaaacgacatctgaaaaaacgatatccaac--cacccatcgtcactactcatcccgcaagaaacacccctcaaaaataaa- 10785348  T
Q  228 ctcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctga-aagatcattcagcttccaccacctc 304  Q
    ||| |||||||| | |||||||| ||||| ||  ||||||||||||| | || || ||||||||||||||||||||||    
T  10785349 ctctcagtcctcgataccaaagcagagccgcacccgaaaagctcctatcagagaaaatcattcagcttccaccacctc 10785426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 46768566 - 46768343
Alignment:
Q  30 atacaaactaaaggcgcc-gtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||  || ||||| ||    
T  46768566 atacaaacaaaaggcgcccgtatgtaggcggaacacccgaaaataaacaccctaaaaaacacccccgaggacaacacccaccaaaattcacgtcaccacc 46768467  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg---aacacccctcaaaattaa 225  Q
    |||||| ||||||||||| ||||||| |||        ||||||||||||   ||||||||||||||||||| |||| |   || | ||||||| | | |    
T  46768466 taaaacagactccttcacgaaaacgaccac--------cgatatccaacactgcccatcgtcactactcacccccaaagaaaaaaaaccctcaagact-a 46768376  T
Q  226 aactcccagtcctcaacaccaaagctgagccac 258  Q
    |||||||| |||| |||||||||||| ||||||    
T  46768375 aactcccaatcctgaacaccaaagctaagccac 46768343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 16149155 - 16148990
Alignment:
Q  40 aaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaaca-ctcaccaaaatatacatcaccgcctaaaactgac 138  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |  ||||||||| | | | | |||||| || ||||| |||||||| |||    
T  16149155 aaggcgccgtatataggcggaacacgcgaaaataaacaccctaaaagacaaccttgaggacaaaagcccgctaaaatacacgtcaccacctaaaacagac 16149056  T
Q  139 tccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaa 205  Q
     ||||||   ||||||  |||| ||| ||||||||||| | ||||||||||||||||||||| ||||    
T  16149055 accttcatgtaaacgactactg-aaaaacgatatccaaaagcacccatcgtcactactcacccccaa 16148990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 32863237 - 32863406
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||||||| | | ||||||||||||||||||| |||||||||||||   ||| |||||   ||||||||||| |||||| ||| || ||||||||    
T  32863237 aatacaaactaaatgtgtcgtatataggcggaacacctgaaaataaacaccaagaaaaacacccaagaggacaacacccaccaacatacacgtcaccgcc 32863336  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactca 198  Q
    |||||| || |||| ||| ||||||| || |||||||||||||||   || ||| ||||||||| |||||    
T  32863337 taaaacagaatcctccacgaaaacgaccattgtaaacacgatatctcgcaccactcatcgtcacaactca 32863406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 306
Target Start/End: Original strand, 31290740 - 31290987
Alignment:
Q  57 cggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagc 156  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||  | |  || | || |||||||| |||||| | ||||||||| | ||||||| |    
T  31290740 cggaacacccgaaaataaacaccataaaa-acacccctgaggacaattcccttcata-tacacatcaccacctaaatcagactccttcgcgaaaacgacc 31290837  T
Q  157 actgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaa---cacccctcaaaattaaaactcccagtcctcaacaccaaagctga 253  Q
    |||||||| | |||| |||||  || ||||||||||||||||||  ||| |||   ||||||| |||| ||||   | || ||   ||||||||||||||    
T  31290838 actgtaaaaatgatagccaac--catccatcgtcactactcaccctcaaagaaaaacacccctaaaaaataaacggctca-tctagaacaccaaagctga 31290934  T
Q  254 gccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||||||| ||||||||||||| | |||||||||  || |||||||||||||||    
T  31290935 gccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctctc 31290987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 306
Target Start/End: Complemental strand, 16577579 - 16577374
Alignment:
Q  100 caacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcac 199  Q
    |||||| |||||||||| |||||| | |||||||| ||||| ||||| ||||||| ||||  ||| | ||||||||  | ||  ||||||| ||||||||    
T  16577579 caacacccaccaaaataaacatcatcacctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatccataaccattcatcgtccctactcac 16577480  T
Q  200 caccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccacc 299  Q
      | || ||||||||||| |||  ||| ||  |||||  || |||||||| |||||||||| |||||||||||||    |||||||||||||||||||||    
T  16577479 tccaaaagaacacccctctaaaagaaa-ctttcagtcaccatcaccaaagttgagccacatccgaaaagctcctattccaaagatcattcagcttccacc 16577381  T
Q  300 acctctc 306  Q
    |||||||    
T  16577380 acctctc 16577374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 6583117 - 6583184
Alignment:
Q  239 caacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||||||    
T  6583117 caacaccaaagctgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctctc 6583184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 11439711 - 11439919
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| ||||||| | ||||||| ||||||| ||||||||||||||||||||  |  || |||| |||||||  |||||||||| || ||||| ||    
T  11439711 aatacaaacaaaaggcgacatatatagacggaacatccgaaaataaacaccctaaa--atccccctgaagacaacatccaccaaaatacacgtcaccacc 11439808  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactact-caccaccaacg---aacacccctcaaaatta 224  Q
    |||||| ||  ||||||| ||| | | ||| ||||| | ||||||||||| |||  |||||||||||| |||| |||| |   ||||||||||| ||||     
T  11439809 taaaacagatcccttcacgaaagcaaccaccgtaaaaatgatatccaacaccacttatcgtcactactccacccccaaagaaaaacacccctcagaatt- 11439907  T
Q  225 aaactcccagtc 236  Q
    ||||||||||||    
T  11439908 aaactcccagtc 11439919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 27031687 - 27031806
Alignment:
Q  185 atcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagat 284  Q
    |||||||||||||||| |||  |||||||||||||||| ||||||||||| | |||||| | || |||||||||||||||||||||| || | ||| ||     
T  27031687 atcgtcactactcacc-ccagagaacacccctcaaaat-aaaactcccagacttcaacatccaaactgagccacattcgaaaagctcttaaccgaatgaa 27031784  T
Q  285 cattcagcttccaccacctctc 306  Q
    ||| |||||||||| |||||||    
T  27031785 catgcagcttccacaacctctc 27031806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 52278509 - 52278430
Alignment:
Q  213 ccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagct 293  Q
    |||||||||||||| |||||||||||||||| ||||| |||||||||| |||||| |||||| |||||||||||| |||||    
T  52278509 ccctcaaaattaaa-ctcccagtcctcaacatcaaagttgagccacatccgaaaaactcctatctgaaagatcatgcagct 52278430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 16147742 - 16147671
Alignment:
Q  235 tcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||||| |||||||||||||||||||| |||||||||| || ||||||||||||||| ||| |||||||||||    
T  16147742 tcctctacaccaaagctgagccacatccgaaaagctcatatctgaaagatcattcaactttcaccacctctc 16147671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 46692627 - 46692739
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| |||||||||||||||||||| | || | |||||||||||||||||||  ||| ||||||||  ||||  ||||||| |||| || |||||||     
T  46692627 aaaaacaagcactgtaaacacgatatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaa--taaaacttccagaccccaacaccc 46692724  T
Q  247 aagctgagccacatt 261  Q
    |||||||||||||||    
T  46692725 aagctgagccacatt 46692739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 7857893 - 7857800
Alignment:
Q  180 cacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctccta 274  Q
    ||||||||| ||||||||||| |||  |||||||||||||||| ||||||||||| | |||||||| || ||||||||||||  |||||||||||    
T  7857893 cacccatcgccactactcacccccatagaacacccctcaaaat-aaaactcccagacttcaacacccaaactgagccacatttcaaaagctccta 7857800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 9313031 - 9313087
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 85  Q
    ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||    
T  9313031 aatacaatcaaaaggcgtcgtatataggcggaacacccgaaaataaacaccctaaaa 9313087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 274
Target Start/End: Original strand, 46814246 - 46814401
Alignment:
Q  118 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 217  Q
    |||||||| ||||| || ||| |||| ||| |||| | | ||||||||||  ||||||  | |  |||||||||||||||||| ||||  ||||||||||    
T  46814246 acatcaccacctaagacagacaccttaacagaaacaaaccctgtaaacacagtatccacaaccgtccatcgtcactactcacctccaaataacacccctc 46814345  T
Q  218 aaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctccta 274  Q
     |||| ||||||||||  | |||||||| | || |||||||||||||||||||||||    
T  46814346 gaaat-aaaactcccatacttcaacacccacgccgagccacattcgaaaagctccta 46814401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 5459434 - 5459289
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| | ||||||||||||| |||||| || | |||||||||||||||||||  ||| ||||| || |||||| ||||||| |||| || |||||||     
T  5459434 aaaaacaatcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaaca-ccatcaaaa-taaaacttccagaccccaacaccc 5459337  T
Q  247 aagctgagccaca-ttcgaaaagctcctagctgaaagatcattcagct 293  Q
    ||||||||||||| ||| || ||| |||| ||||| |||||| |||||    
T  5459336 aagctgagccacatttcaaagagcacctaactgaaggatcatgcagct 5459289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 24449738 - 24449850
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| ||||||||||||||| |||||| || | |||||||||||||||||||  |||  |||| ||||||||| ||||||||| || || |||||||     
T  24449738 aaaaacaagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataaca-ccctcaaaa-taaaactcctagaccccaacaccc 24449835  T
Q  247 aagctgagccacatt 261  Q
    |||||||||| ||||    
T  24449836 aagctgagccgcatt 24449850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 24659168 - 24659080
Alignment:
Q  180 cacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagct 270  Q
    ||||||||||||||||||||| ||||  |||||||||||||| ||||||||||||  || ||| || | ||||||||||||||||||||||    
T  24659168 cacccatcgtcactactcacccccaaataacacccctcaaaa-taaaactcccag-acttaactcccaggctgagccacattcgaaaagct 24659080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 2987816 - 2987924
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgccta 130  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||||||   ||| ||||| |||    |||||| |||||||||| ||||||||  |||    
T  2987816 tacaaactaa-ggcgccgtatataggcggaacatccgaaaacaaacaccaacaaaaacacccctgcaatcaacacccaccaaaataaacatcacccacta 2987914  T
Q  131 aaactgactc 140  Q
    ||||||||||    
T  2987915 aaactgactc 2987924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 5389230 - 5389340
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| ||||| ||||||||| |||||| || | ||||||||||||||||||   ||| ||||| ||||||||| |||||||||||| || |||||||     
T  5389230 aaaaacaagcaccgtaaacacggtatccaccaccgcccatcgtcactactcacttacaa-gaaca-ccctcaaaa-taaaactcccagaccccaacaccc 5389326  T
Q  247 aagctgagccacat 260  Q
    ||||||||||||||    
T  5389327 aagctgagccacat 5389340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 376497 - 376549
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccct 81  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||||||||||    
T  376497 aatacaaagtaaaggcgccgtatataggcagaacacctgaaaataaacaccct 376549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 38544407 - 38544467
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagaca 89  Q
    |||||||||||||| || |||||||| | |||||||||||||||||||||| |||||||||    
T  38544407 aatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaagaca 38544467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 6582968 - 6583055
Alignment:
Q  55 ggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactcct 142  Q
    ||||||||||||||||||||||||| ||||| ||||   ||| || ||||| |||||||||| || ||||| |||||||| |||||||    
T  6582968 ggcggaacacccgaaaataaacaccataaaaaacactcatgatgataacacccaccaaaatacacgtcaccacctaaaacagactcct 6583055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 52278661 - 52278589
Alignment:
Q  40 aaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaa 114  Q
    |||||||| ||||||||||||||||| ||||||||||| ||| ||||||||| | ||||||||||| ||||||||    
T  52278661 aaggcgccatatataggcggaacacctgaaaataaaca-ccttaaagacaccac-gaggacaacacccaccaaaa 52278589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 41126362 - 41126443
Alignment:
Q  225 aaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    |||||| ||||||||| |||||||| ||| ||||||  |||||||||||| |  ||||||| ||||||||||| ||||||||    
T  41126362 aaactctcagtcctcatcaccaaagttgatccacatctgaaaagctcctatccaaaagatcgttcagcttccagcacctctc 41126443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 9313179 - 9313272
Alignment:
Q  208 aacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacct 303  Q
    ||||||| ||||||||||| ||||||||||| || |||||||||||||||||| |||||| ||| ||  |||| |||||| || || |||||||||    
T  9313179 aacacccttcaaaattaaa-ctcccagtcctgaa-accaaagctgagccacatccgaaaaactcgtatttgaaggatcatacaactgccaccacct 9313272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 42374573 - 42374526
Alignment:
Q  30 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaaca 77  Q
    |||||||| || |||||| |||||||||||||||||||||||||||||    
T  42374573 atacaaacaaagggcgccatatataggcggaacacccgaaaataaaca 42374526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 46603751 - 46603636
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaat-aaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgc 127  Q
    ||||||||| |||| ||  ||||||||||||||||||||||||| ||||| | ||||||  ||| |||| |||||||| |||||||||| | ||||||      
T  46603751 aatacaaacaaaagacgttgtatataggcggaacacccgaaaataaaacatcataaaag--acccctgaagacaacacccaccaaaata-aaatcaccat 46603655  T
Q  128 ctaaaactgactccttcac 146  Q
    ||||||| |||| ||||||    
T  46603654 ctaaaacagacttcttcac 46603636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 41126142 - 41126204
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacc 91  Q
    ||||||||||||||||  ||||||||||  |||||||||||||||||||   |||||||||||    
T  41126142 aatacaaactaaaggcatcgtatataggtagaacacccgaaaataaacattataaaagacacc 41126204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 50588964 - 50589014
Alignment:
Q  30 atacaaactaaaggcgccgtatataggcggaacacccgaa-aataaacacc 79  Q
    |||||||| ||||||||||||||||||||||||||| ||| ||||||||||    
T  50588964 atacaaacgaaaggcgccgtatataggcggaacacctgaagaataaacacc 50589014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 17033984 - 17033939
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataa 74  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||||    
T  17033984 aatacaaacaaaaggcgtcgtatataagcggaacacccgaaaataa 17033939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 260
Target Start/End: Complemental strand, 41920730 - 41920619
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| |||| |||||||||| ||| || || | || ||||||||||||||||  |||  ||||||| ||||||| |||||||| || || |||||||     
T  41920730 aaaaacaagcaatgtaaacacggtattcaccaccgcctatcgtcactactcacccacaaaaaacaccc-tcaaaat-aaaactccaagaccccaacaccc 41920633  T
Q  247 aagctgagccacat 260  Q
    ||||||||||||||    
T  41920632 aagctgagccacat 41920619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 37200532 - 37200485
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 76  Q
    |||||||||||||| |  ||||||||||||||||| ||||||||||||    
T  37200532 aatacaaactaaagacatcgtatataggcggaacatccgaaaataaac 37200485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 38548845 - 38548934
Alignment:
Q  107 caccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactca 198  Q
    |||||||||| |||||||| |||||||| ||||| ||||| ||| ||| ||||| ||| ||||||| ||  | |||||||||||||||||||    
T  38548845 caccaaaataaacatcaccacctaaaacagactctttcacgaaa-cgatcactgaaaa-acgatattcataaccacccatcgtcactactca 38548934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 38546876 - 38546930
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 85  Q
    ||||||||||| | | ||||||||||||||||| ||||||||||| ||| |||||    
T  38546876 tacaaactaaatgtgtcgtatataggcggaacatccgaaaataaaaaccataaaa 38546930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 19599031 - 19598990
Alignment:
Q  39 aaaggcgccgtatataggcggaacacccgaaaa-taaacacc 79  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  19599031 aaaggcgccgtatataggcggaacacctgaaaagtaaacacc 19598990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 38544511 - 38544637
Alignment:
Q  94 tgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcact 193  Q
    |||||||||||  |||||||||| |||||||| |||||||| ||||| |||||   || || ||||| ||| ||||||||||  | ||| ||||||||||    
T  38544511 tgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttcac-ggaatgatcactggaaa-acgatatccataaccactcatcgtcact 38544608  T
Q  194 actcaccaccaacg-aacacccctcaaaat 222  Q
    ||||| | |||||| |||||||||| ||||    
T  38544609 actcatc-ccaacgtaacacccctctaaat 38544637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 24684310 - 24684350
Alignment:
Q  158 ctgtaaacacgatatccaacatcacccatcgtcactactca 198  Q
    |||||||||||||||||| || | |||||||||||||||||    
T  24684310 ctgtaaacacgatatccaccaccgcccatcgtcactactca 24684350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 27905819 - 27905760
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacc 91  Q
    ||||||||| ||||| |||||||||| |||||||   |||||||||||| |||||||||||    
T  27905819 tacaaactagaggcgtcgtatataggtggaacacaa-aaaataaacaccataaaagacacc 27905760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 29 - 306
Target Start/End: Original strand, 10173270 - 10173545
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||||||| |||  |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || || ||||||| |  |||| |||    
T  10173270 aatacaaactaaaagcgttgtatataggcggaacacctgaaaataaacaccctaaaagatacctctgaggacaatacccatcaaaatacatgtcacggcc 10173369  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaac 228  Q
    |||||| |||  |||||  |||||||  |||||||| ||||||| ||||| ||| ||||||||||||||||| |||| ||| || |||||||||| ||||    
T  10173370 taaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtcactactcacc-ccaaagaatactcctcaaaatt-aaac 10173467  T
Q  229 tcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    || ||||||||||||||||||||||||||||| |||||||||| ||    |||||||||||| |||||||||||||||    
T  10173468 tctcagtcctcaacaccaaagctgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctctc 10173545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 29 - 304
Target Start/End: Complemental strand, 7696351 - 7696077
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| |||||  ||||||||||||||||||||| |||||||||||| ||||| ||||| | ||||||||||| |||||||||| |||||||| ||    
T  7696351 aatacaaacaaaaggaaccgtatataggcggaacacccaaaaataaacaccttaaaa-acacccccgaggacaacacccaccaaaatacacatcaccacc 7696253  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccacc---aacgaacacccctcaaaattaa 225  Q
    |||||   |||||||||| ||||||| || |||||| | ||||| ||||  ||| ||||||||||||||||  ||    |  ||||||||| |||| |||    
T  7696252 taaaataaactccttcacgaaaacgaccaatgtaaaaatgatattcaac--cactcatcgtcactactcactcccttagaaaaacacccct-aaaaataa 7696156  T
Q  226 aactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctc 304  Q
    ||||||  ||||| |||||||||| |||||||||| |  ||| |||||| | |||||||||||||||||||||||||||    
T  7696155 aactcctggtcctgaacaccaaagttgagccacatcctcaaatctcctatccgaaagatcattcagcttccaccacctc 7696077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 47 - 306
Target Start/End: Original strand, 37770359 - 37770610
Alignment:
Q  47 cgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcac 146  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  |||||| | ||| |||||||||  || ||||| |||||||| |||||||||||    
T  37770359 cgtatataggcggaacacccgaaaataaacaccctaaaa-acacca-tgaggataccacccaccaaaatccacgtcaccacctaaaacagactccttcac 37770456  T
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaaca---cccctcaaaattaaaactcccagtcctcaaca 243  Q
     ||||| | |||| |||        ||||||| ||||| |||||||||||| || |||| ||| |   ||||||||||||||| ||| ||| ||| ||||    
T  37770457 gaaaaccaccactataa--------tccaacaccacccgtcgtcactactcgcccccaaagaaaaaaccccctcaaaattaaa-ctcacagacctgaaca 37770547  T
Q  244 ccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||||||| ||||||| |  ||||||||| || |||||||||||||||||||||| ||||||||    
T  37770548 ccaaagccgagccacctcagaaaagctcatatctgaaagatcattcagcttccaacacctctc 37770610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 306
Target Start/End: Original strand, 16952154 - 16952350
Alignment:
Q  110 caaaatatacatcaccgcctaaaactgactccttcacaaaaacgagc-actgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacga 208  Q
    ||||||| |||||||| | |||||| ||| ||||||| ||||| | | |||| ||| | ||||| || || ||| ||||||||||||||||| |||| ||    
T  16952154 caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaaga 16952253  T
Q  209 acacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||||||||| |||| ||| |||||||||||||||||||||| ||| |||||| ||||||||||||| | |||||||| || |||||||||||||||||    
T  16952254 acacccctctaaatgaaa-ctcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctc 16952350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 306
Target Start/End: Original strand, 17022819 - 17023015
Alignment:
Q  110 caaaatatacatcaccgcctaaaactgactccttcacaaaaacgagc-actgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacga 208  Q
    ||||||| |||||||| | |||||| ||| ||||||| ||||| | | |||| ||| | ||||| || || ||| ||||||||||||||||| |||| ||    
T  17022819 caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaaga 17022918  T
Q  209 acacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||||||||| |||| ||| |||||||||||||||||||||| ||| |||||| ||||||||||||| | |||||||| || |||||||||||||||||    
T  17022919 acacccctctaaatgaaa-ctcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctc 17023015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 306
Target Start/End: Original strand, 17060125 - 17060321
Alignment:
Q  110 caaaatatacatcaccgcctaaaactgactccttcacaaaaacgagc-actgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacga 208  Q
    ||||||| |||||||| | |||||| ||| ||||||| ||||| | | |||| ||| | ||||| || || ||| ||||||||||||||||| |||| ||    
T  17060125 caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaaga 17060224  T
Q  209 acacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||||||||| |||| ||| |||||||||||||||||||||| ||| |||||| ||||||||||||| | |||||||| || |||||||||||||||||    
T  17060225 acacccctctaaatgaaa-ctcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctc 17060321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 306
Target Start/End: Complemental strand, 34230591 - 34230314
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| |||| ||||||||||||||||||||||  |||||||||| | ||||| ||||| || || ||||||  |||||||||| || |||||  |    
T  34230591 aatacaaacaaaagacgccgtatataggcggaacaccaaaaaataaacatcgtaaaa-acaccccttagaacaacatccaccaaaatacacgtcaccatc 34230493  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg----aacacccctcaaaatta 224  Q
    | |||| ||||| | ||| ||||||| |||| |||| ||||||||||||| ||||| |||  |||||||||| |||| |    ||||||| | ||||  |    
T  34230492 t-aaacagactcttccacgaaaacgaccactataaaaacgatatccaacaacacccgtcgcaactactcacctccaaagaaaaaacacccataaaaaaaa 34230394  T
Q  225 aaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||| |  ||||||| |||||||||| ||||||||||  ||||||||| ||  ||||||||||||||||||||||||||||||    
T  34230393 aaatt--cagtcctaaacaccaaagttgagccacatctgaaaagctcttatttgaaagatcattcagcttccaccacctctc 34230314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 174
Target Start/End: Complemental strand, 4975135 - 4974990
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||| |  |||||| ||||| ||||||| || ||| |||| ||    
T  4975135 aatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacc 4975036  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatcc 174  Q
    |||||| |||| |||||| ||||||| ||||||||| |||||||||    
T  4975035 taaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4974990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 174
Target Start/End: Complemental strand, 4993043 - 4992898
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||| |  |||||| ||||| ||||||| || ||| |||| ||    
T  4993043 aatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacc 4992944  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatcc 174  Q
    |||||| |||| |||||| ||||||| ||||||||| |||||||||    
T  4992943 taaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4992898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 247
Target Start/End: Complemental strand, 12343195 - 12342992
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    |||||||||||||| || | || | ||||||||||||||||||||||||||             ||||||||||||  || ||||||| || ||||| ||    
T  12343195 aatacaaactaaagacgtcttacaaaggcggaacacccgaaaataaacacc-------------ctgaggacaacatccatcaaaatacacgtcaccacc 12343109  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactca-ccaccaacgaacacccctcaaaattaaaa 227  Q
    |||||| ||||||||||| ||||||| | ||||||| ||||||||||||  ||| ||||||||||||||| || ||||  |||||||||||||| | |||    
T  12343108 taaaacagactccttcacgaaaacgacctctgtaaaaacgatatccaac--cactcatcgtcactactcaccccccaagaaacacccctcaaaaat-aaa 12343012  T
Q  228 ctcccagtcctcaacaccaa 247  Q
    ||||||||||||||||||||    
T  12343011 ctcccagtcctcaacaccaa 12342992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 258
Target Start/End: Complemental strand, 387476 - 387338
Alignment:
Q  118 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 217  Q
    |||||||| |||||||| ||||||||||||||||| |||| ||||||||| | || || || | ||||||||||||| ||||| |||| ||||| |||||    
T  387476 acatcaccacctaaaacagactccttcacaaaaacaagcattgtaaacacaaaattcaccaccgcccatcgtcactattcacccccaaagaaca-ccctc 387378  T
Q  218 aaaattaaaactcccagtcctcaacaccaaagctgagccac 258  Q
    |||| |||||||||||| || ||||||| ||||||||||||    
T  387377 aaaa-taaaactcccagaccccaacacccaagctgagccac 387338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 306
Target Start/End: Original strand, 14106305 - 14106488
Alignment:
Q  122 caccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaa 221  Q
    |||| ||||| || ||| |||| ||| |||| | || |||||||||  ||||||  | ||| ||||||||||||||||| |||| |||||||||||||||    
T  14106305 caccacctaagacggacaccttaacagaaacaaacattgtaaacacagtatccacaaccactcatcgtcactactcacccccaaagaacacccctcaaaa 14106404  T
Q  222 ttaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    | ||||||| ||| | |||||||| ||||||||||||||||| ||||||| || | ||| |||||| || ||||||| |||||||    
T  14106405 t-aaaactctcagacttcaacacccaagctgagccacattcgtaaagctcttaaccgaatgatcatacaacttccacaacctctc 14106488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 7460974 - 7460836
Alignment:
Q  122 caccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaa 221  Q
    |||||||||| || ||| |||| ||| |||| | |||||||||||| |||||||  | ||| ||||||||||||||| | |||| |||||||||||||||    
T  7460974 caccgcctaagacggacaccttaacagaaacaaacactgtaaacacaatatccacaaccacacatcgtcactactcaaccccaaagaacacccctcaaaa 7460875  T
Q  222 ttaaaactcccagtcctcaacaccaaagctgagccacatt 261  Q
     |||||||||||| | |||||||| |||||||||||||||    
T  7460874 -taaaactcccagacttcaacacccaagctgagccacatt 7460836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 274
Target Start/End: Complemental strand, 7874583 - 7874438
Alignment:
Q  127 cctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaa 226  Q
    ||||| || ||| |||| ||| |||| | ||||||||||||  ||||||  | ||||||||||||||||||||| |||| ||||| |||||||||| |||    
T  7874583 cctaagacggacaccttgacagaaacaaacactgtaaacacagtatccacaaccacccatcgtcactactcacc-ccaaagaacatccctcaaaat-aaa 7874486  T
Q  227 actcccagtcctcaacaccaaagctgagccacattcgaaaagctccta 274  Q
    ||||| || | |||||||| ||||||||||||||||||||||||||||    
T  7874485 actccaagacttcaacacccaagctgagccacattcgaaaagctccta 7874438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 118 - 306
Target Start/End: Complemental strand, 5254553 - 5254371
Alignment:
Q  118 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 217  Q
    |||||||| ||||| || ||| |||| ||| |||| | ||||||||||||  ||||||  | |||||||||||||||||||||  ||| |||||||||||    
T  5254553 acatcaccacctaagacggacaccttaacagaaacaaacactgtaaacacagtatccacaaccacccatcgtcactactcacc--caaagaacacccctc 5254456  T
Q  218 aaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||||    ||||| ||| | |||||||| || ||||||||||||||||||||||| | | ||| || ||| |||||||||| |||||||    
T  5254455 aaaa----aactctcagacttcaacacccaaactgagccacattcgaaaagctccaaaccgaatgaacatgcagcttccacaacctctc 5254371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 293
Target Start/End: Original strand, 39338674 - 39338818
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| ||||||||||||| | |||||| |||| |||||||||||||||||||  ||| ||||| ||||||||| |||||||||||| ||||||||||     
T  39338674 aaaaacaagcactgtaaacaag-tatccaccatcgcccatcgtcactactcacccacaaagaaca-ccctcaaaa-taaaactcccagacctcaacaccc 39338770  T
Q  247 aagctgagccac-attcgaaaagctcctagctgaaagatcattcagct 293  Q
    |||||||| ||| ||||||| ||| |||| | ||| ||||||||||||    
T  39338771 aagctgagtcacaattcgaagagcacctaaccgaaggatcattcagct 39338818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 306
Target Start/End: Complemental strand, 1269787 - 1269596
Alignment:
Q  111 aaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaac 210  Q
    |||||| |||||||| ||||||||  | |||||| |  |||||| | || |||| ||||||||||||  |||||||||||||||||| || ||||  ||     
T  1269787 aaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatccaac--cacccatcgtcactactcgcc-ccaagaaat 1269691  T
Q  211 acccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctg-aaagatcattcagcttccaccacctctc 306  Q
    |||| | |||| ||||  ||  | |||||||||||||||| ||||||||||||||||||||||| | | |||||| ||||||||||||||| |||||    
T  1269690 accctttaaaaataaacttc--aatcctcaacaccaaagcagagccacattcgaaaagctcctatccgaaaagattattcagcttccaccaactctc 1269596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 13337640 - 13337565
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacac 105  Q
    ||||||||| ||||||| |||||||||| |||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  13337640 aatacaaacaaaaggcgtcgtatataggtggaacacctgaaaataaacaccctaaaa-acacccctgaggacaacac 13337565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 17116694 - 17116800
Alignment:
Q  154 agcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctga 253  Q
    ||||||||||||||| |||||| || | |||||||||| ||||||||  ||| ||||| |||||||||| ||||||| ||| || ||||||| |||||||    
T  17116694 agcactgtaaacacggtatccaccaccgcccatcgtcattactcacccacaaagaaca-ccctcaaaataaaaactctcagaccccaacacccaagctga 17116792  T
Q  254 gccacatt 261  Q
    ||||||||    
T  17116793 gccacatt 17116800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 10524373 - 10524228
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| ||||| ||||||||| |||||| || | |||||||||||||||||||  ||| ||||||||  ||||  |||||||||||  || |||||||     
T  10524373 aaaaacaagcaccgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccctccaaa--taaaactcccaaaccccaacaccc 10524276  T
Q  247 aagctgagccacat-tcgaaaagctcctagctgaaagatcattcagct 293  Q
    |||||||||||||| ||||| ||| |||| | ||| |||||| |||||    
T  10524275 aagctgagccacatatcgaagagcacctaaccgaaggatcatgcagct 10524228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 191
Target Start/End: Original strand, 41113431 - 41113590
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    |||||||||||||| |   |||||||||||||||| ||||||||||| ||||||||| |||||  |||||    ||| |||||||||| || | ||  ||    
T  41113431 aatacaaactaaagacattgtatataggcggaacatccgaaaataaataccctaaaaaacacccatgagg---gcacccaccaaaataaacgttactacc 41113527  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtca 191  Q
    |||||| ||||||||||| |||||||  | |||| | ||||||||| ||| ||| ||||||||    
T  41113528 taaaacagactccttcacgaaaacgactattgtacaaacgatatcccacagcactcatcgtca 41113590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 22884805 - 22884852
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 76  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22884805 aatacaaactaaaggcgtcgtatataggcggaacacccgaaaataaac 22884852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 33788316 - 33788362
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaa 75  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  33788316 aatacaaactaaaggcgccgtatatatgcggaacacccgaaaataaa 33788362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 4472342 - 4472277
Alignment:
Q  20 gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 85  Q
    |||||| | ||||||||||||||||| ||||||||| ||||||| ||||||||||||||| |||||    
T  4472342 gaatcagagaatacaaactaaaggcgtcgtatatagacggaacatccgaaaataaacaccataaaa 4472277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 27740378 - 27740331
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 76  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  27740378 aatacaaactaaaggcgtcgtatataggtggaacacccgaaaataaac 27740331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 200
Target Start/End: Original strand, 29139642 - 29139813
Alignment:
Q  30 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccg--- 126  Q
    |||||||  ||||||| |||||||  | ||||||| |||||||||| ||| ||||| ||||||||||  ||||||  |||||||||| || ||||||       
T  29139642 atacaaataaaaggcgtcgtatattagtggaacactcgaaaataaataccttaaaa-acacctctgaaaacaacatccaccaaaatacacgtcaccgtca 29139740  T
Q  127 cctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 200  Q
    |||||||  ||||| ||||||||||| | ||||  ||| ||||||| ||||||||||  | |||||||||||||    
T  29139741 cctaaaagagactctttcacaaaaacaaccactaaaaa-acgatattcaacatcaccagttgtcactactcacc 29139813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 2063269 - 2063208
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccg-aaaataaacaccctaaaagaca 89  Q
    ||||||||| ||||| |||||||||||||| |||||||| |||||||||||| |||||||||    
T  2063269 aatacaaacgaaaggtgccgtatataggcgaaacacccgaaaaataaacaccataaaagaca 2063208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 14405441 - 14405345
Alignment:
Q  178 atcacccatcgtcactactcaccaccaac-gaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctccta 274  Q
    ||||||||| ||||||||||||| ||||  ||||| |||||||||| ||||||||||| | |||||||| |||  ||||||||| ||| |||||||||    
T  14405441 atcacccattgtcactactcacccccaaaagaacatccctcaaaat-aaaactcccagacttcaacacccaagtcgagccacatgcgacaagctccta 14405345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 306
Target Start/End: Original strand, 41086513 - 41086765
Alignment:
Q  47 cgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcac 146  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||| |||| ||||||              || ||||| |||||||| ||| |||| ||    
T  41086513 cgtatataggcgaaacacccgaaaataaataccctaaaa-acacccctgaagacaac--------------acgtcaccacctaaaacagaccccttaac 41086597  T
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccacc--------aacgaacacccctcaaaattaaaactcccagtcct 238  Q
     ||| ||| |||| |||| ||||||||||| | ||||||||||||||||||  ||||        ||  |||||||||||||| | |||||| || ||||    
T  41086598 gaaagcgaccactctaaaaacgatatccaataccacccatcgtcactactcctcaccccccaaagaaaaaacacccctcaaaa-tcaaactcgcaatcct 41086696  T
Q  239 -caacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
      ||| ||||||  ||| ||||| | |||||||| || | |||||||||||||||||||||||||||||    
T  41086697 gaaactccaaagtagagtcacatccaaaaagctcttatccgaaagatcattcagcttccaccacctctc 41086765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 29997337 - 29997215
Alignment:
Q  27 aaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccg 126  Q
    |||||| |||| |||||| ||||||||| |||||||| ||||||||||||| |||||||  || | |||||||| || |  || ||||||||| |||||     
T  29997337 aaaataaaaacaaaaggcaccgtatataagcggaacatccgaaaataaacatcctaaaa-tcatccctgaggaccactcctactaaaatatacgtcacca 29997239  T
Q  127 cctaaaactgactccttcacaaaa 150  Q
     ||||||| || ||||||| ||||    
T  29997238 tctaaaacagattccttcataaaa 29997215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 25504579 - 25504629
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 79  Q
    ||||||||| ||||||||||||||||| || ||||||| ||||||||||||    
T  25504579 aatacaaacaaaaggcgccgtatatagacgaaacacccaaaaataaacacc 25504629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 24165867 - 24165917
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 79  Q
    |||||| ||||||| | | |||||||||||||||||||||||| |||||||    
T  24165867 aatacagactaaagacactgtatataggcggaacacccgaaaacaaacacc 24165917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 29487485 - 29487447
Alignment:
Q  35 aactaaaggcgccgtatataggcggaacacccgaaaata 73  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  29487485 aactaaaggagccgtatataggcggaacacctgaaaata 29487447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 16952035 - 16952096
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacac 90  Q
    ||||||||||| || || ||||||||||| ||||| || |||||||||| | ||||||||||    
T  16952035 aatacaaactatagacgtcgtatataggcagaacatccaaaaataaacatcataaaagacac 16952096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 17022700 - 17022761
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacac 90  Q
    ||||||||||| || || ||||||||||| ||||| || |||||||||| | ||||||||||    
T  17022700 aatacaaactatagacgtcgtatataggcagaacatccaaaaataaacatcataaaagacac 17022761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 30 - 298
Target Start/End: Original strand, 26045655 - 26045924
Alignment:
Q  30 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcct 129  Q
    |||||||| ||||||||||||||||| ||||||| || |||||||||||||||||| || || ||||||||||||| |||||||||  || ||||| |||    
T  26045655 atacaaacaaaaggcgccgtatatagacggaacatccaaaaataaacaccctaaaaaacgcccctgaggacaacacccaccaaaattcacgtcaccacct 26045754  T
Q  130 aaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg---aacacccctcaaaattaaa 226  Q
    ||||| |||| |||||  |||| || ||| ||||| |||| |||||||| | ||||||||||||||||||| |||| |   |||||||||||||||| ||    
T  26045755 aaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcacc-ccaaagaaaaacacccctcaaaatt-aa 26045852  T
Q  227 actcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccac 298  Q
    |||| || |||| |||||||||| |||| ||| | |||||||||| || ||||||||||| |||||||||||    
T  26045853 actctcaatcctaaacaccaaagttgagtcacctccgaaaagctcatatctgaaagatcaatcagcttccac 26045924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 31 - 268
Target Start/End: Original strand, 13953941 - 13954178
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgccta 130  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | |||  |||||||||| | |||||||||| |  ||| | ||||    
T  13953941 tacaaactaaaggcgccgtatataggcggaacacctgaaaataaacaccttaaaaaatacccttgaggacaactcccaccaaaatacatgtcatctccta 13954040  T
Q  131 aaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg-aacacccctcaaaattaaaact 229  Q
    |||| ||||  ||||  || ||||  |||||||| || |||||| ||||||||||||||||| |||| || |||||| |||||||||| ||||| |||||    
T  13954041 aaacagactttttcatgaagacgactactgtaaaaacaatatcccacatcacccatcgtcacaactctcccccaacgaaacacccctctaaatt-aaact 13954139  T
Q  230 cccagtcctcaacaccaaagctgagccacattcgaaaag 268  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  13954140 cccagtcctcaacgccaaagctgagccacatccgaaaag 13954178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 29 - 306
Target Start/End: Original strand, 26405239 - 26405513
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||  |||||||||| || ||||| ||    
T  26405239 aatacaaacaaaaggcgtcgtatatagtcggaacacccgaaaataaacaccttaaaa-acacccctgaggacaacaaccaccaaaatacacgtcaccacc 26405337  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccacca--acgaacacccctcaaaattaaa 226  Q
    |||||| |||| |||||   ||| || |||||| || || |||||||  ||||||||||||||||||||||| | |  |  ||||| | |||||||| ||    
T  26405338 taaaacagacttcttcatggaaatga-cactgttaaaaccatatcca--atcacccatcgtcactactcacctcaaagaaaaacactcatcaaaatt-aa 26405433  T
Q  227 actcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    |||||  ||||| ||||||||||  ||||||| | |||||||||| || | |||||| || |||||||||||||||||||    
T  26405434 actcctcgtcctgaacaccaaagtcgagccacctccgaaaagctcatatccgaaagaccaatcagcttccaccacctctc 26405513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 27 - 266
Target Start/End: Original strand, 14302133 - 14302373
Alignment:
Q  27 aaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccg 126  Q
    |||||| |||| | || ||||||||||||  ||||||||| |||||||| | ||||||| ||||| |||| |||||||| |||||||||| || |||||     
T  14302133 aaaatataaacaagagacgccgtatatagaaggaacacccaaaaataaaaatcctaaaa-acacccctgatgacaacacccaccaaaatacacgtcacca 14302231  T
Q  127 cctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg---aacacccctcaaaatt 223  Q
    |||||||| || |||||| | ||||||| || |||||| ||||||||||||| ||||  ||||||||||||| | |||| |   || |||||||||||||    
T  14302232 cctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaaaaatacccctcaaaatt 14302331  T
Q  224 aaaactcccagtcctcaacaccaaagctgagccacattcgaaa 266  Q
     ||||||||| |||| |||||||||||||||||| || |||||    
T  14302332 -aaactcccactcctgaacaccaaagctgagccatatccgaaa 14302373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 39 - 304
Target Start/End: Complemental strand, 8297851 - 8297583
Alignment:
Q  39 aaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgac 138  Q
    |||||||  ||| |||||||||||||| ||||||| ||||||||||| ||||| ||||||| ||||  |||||||||| |||||||| ||||||||  ||    
T  8297851 aaaggcgttgtacataggcggaacacctgaaaatacacaccctaaaa-acacccctgaggataacatccaccaaaatacacatcaccacctaaaacacac 8297753  T
Q  139 tccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcact----actcaccaccaacg---aacacccctcaaaattaaaactcc 231  Q
    |||||||  |||| || || |||||| ||||| ||||||  |||| |||||||||    ||||||| |||| |   |||||||||||||||| |||||||    
T  8297752 tccttcaagaaaaagaccaatgtaaaaacgatttccaac--cacctatcgtcactactcactcacccccaaagaaaaacacccctcaaaatt-aaactcc 8297656  T
Q  232 cagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctc 304  Q
    |  || | ||||||||| | ||||||||| ||||||||||||| | |||||| |||||| |||||||||||||    
T  8297655 ccatcatgaacaccaaaaccgagccacatccgaaaagctcctatccgaaagaccattcaacttccaccacctc 8297583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 30097723 - 30097593
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |  ||| |||||||| |||||||||| || ||||| ||    
T  30097723 aatacaaactaaagacgccgtatataggcggaacacccgaaaataaacaccctaaaaaacatccatgatgacaacacccaccaaaatacacgtcaccacc 30097624  T
Q  129 taaaactgactccttcacaaaaacgagcact 159  Q
    |||||| ||||||||||| ||||| ||||||    
T  30097623 taaaacagactccttcacgaaaacaagcact 30097593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 225
Target Start/End: Complemental strand, 7682943 - 7682747
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||| ||||| |||| | || | |||| ||||||| |||||||||| |||||||| ||    
T  7682943 aatacaaattaaaggcgtcgtatataggcggaacatccgaaaataagcaccc-aaaaaatacttatgagaacaacacccaccaaaatacacatcaccacc 7682845  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg-aacacccctcaaaattaa 225  Q
    |||||  ||||| ||||||||||||| ||| ||||| ||  ||||   || || |||||||||||||||| | |||| | ||||||||||||||||||    
T  7682844 taaaatagactctttcacaaaaacgaccaccgtaaaaactttatctcgcaccatccatcgtcactactcaaccccaatgaaacacccctcaaaattaa 7682747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 7161795 - 7161935
Alignment:
Q  118 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 217  Q
    |||||||  |||||||| ||||||||||||||||| ||||||||||||||||| |||| || |||||| |||||||||||||| |||| ||||| || ||    
T  7161795 acatcactacctaaaacagactccttcacaaaaacaagcactgtaaacacgatttccaccaccacccaacgtcactactcacccccaaagaaca-ccatc 7161893  T
Q  218 aaaattaaaactcccagtcctcaacaccaaagctgagccacat 260  Q
    |||| |||||||||||| || ||||||  ||||||||||||||    
T  7161894 aaaa-taaaactcccagaccccaacacacaagctgagccacat 7161935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 255
Target Start/End: Original strand, 21398054 - 21398236
Alignment:
Q  73 aaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatat 172  Q
    ||||||| ||||| ||||| |||||||||||||| || |||||| || |||||  ||||||| ||| ||||||| ||||| | |  |||||| |||||||    
T  21398054 aaacaccttaaaaaacacccctgaggacaacacttacaaaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgatat 21398153  T
Q  173 ccaacatcacccatcgtcactactcaccaccaacg-aacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagc 255  Q
    ||  || |||||||| ||| |||||||| |||||| |||| ||||| ||| | ||||||| ||||||||||||||||| |||||    
T  21398154 cccgcaccacccatcatcagtactcacccccaacgaaacaaccctctaaaat-aaactcctagtcctcaacaccaaagttgagc 21398236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 297
Target Start/End: Complemental strand, 25992391 - 25992129
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |  | |||||||| |||||||||        || ||    
T  25992391 aatacaaacaaaaggcgccgtatatatgcggaacacccgacaataaacaccctaaaa-acacc-ccaatgacaacacccaccaaaat--------ccacc 25992302  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcacta--ctcaccaccaacg----aacacccctcaaaat 222  Q
    |||||| ||| ||||||| ||| | | ||||||||| ||||||||||| | ||||||||| |||||  ||| || |||| |    || |||||||||||     
T  25992301 taaaacagaccccttcacgaaagcaaccactgtaaaaacgatatccaataccacccatcgccactactctcgcccccaaagaaaaaatacccctcaaaa- 25992203  T
Q  223 taaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttcca 297  Q
      ||||||| |||||| ||||||||||| ||||||| | | ||||||| ||  | ||||||||||| ||||||||    
T  25992202 -caaactcctagtcctgaacaccaaagcagagccacctacaaaaagcttctccccgaaagatcattaagcttcca 25992129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 7195014 - 7195114
Alignment:
Q  51 tataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaa 150  Q
    |||| |||||||| || |||||||||||||||||| ||||| ||| ||||||||| |||||||||| || ||||| |||||||| |||||||||||||||    
T  7195014 tatatgcggaacatccaaaaataaacaccctaaaa-acaccgctgcggacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacaaaa 7195112  T
Q  151 ac 152  Q
    ||    
T  7195113 ac 7195114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 24071952 - 24072017
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctct 94  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  24071952 aatacaaactaagggcgccgtatataggcggaacacccgaaaataaacatcataaaagacacctct 24072017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 10175069 - 10174923
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| ||||||  |||||||||||  |||||| |||| |||||| ||||||| ||||||| ||||||||||| ||||||| || || | ||| ||    
T  10175069 aatacaaacaaaaggcatcgtatataggcaaaacacctgaaa-taaacatcctaaaa-acacctccgaggacaacacccaccaaagtacacgtaaccacc 10174972  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaac 177  Q
    |||||| |||||||||  |||||||| ||| ||||| ||||||||||||    
T  10174971 taaaacagactccttctaaaaaacgaccacggtaaaaacgatatccaac 10174923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 33109913 - 33110050
Alignment:
Q  51 tataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaa 150  Q
    ||||| || |||||||||||||||||||  ||||| ||||| || | |||||||| |||||||||| || ||| | ||||||||  || ||||||| |||    
T  33109913 tatagccgaaacacccgaaaataaacactttaaaa-acacc-ct-atgacaacacccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaa 33110009  T
Q  151 acgagcactgtaaacacgatatccaacatcacccatcgtca 191  Q
    |||| ||||||||| ||||||||||| | ||||||||||||    
T  33110010 acgaccactgtaaaaacgatatccaataccacccatcgtca 33110050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 18593516 - 18593404
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| ||||||||||||||| |||||| || | |||||||||||||||||||  ||| ||||| ||  ||||  |||||||||||| || |||||||     
T  18593516 aaaaacaagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacatcctccaaa--taaaactcccagaccccaacaccc 18593419  T
Q  247 aagctgagccacatt 261  Q
    ||| |||||||||||    
T  18593418 aagttgagccacatt 18593404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 306
Target Start/End: Original strand, 7195112 - 7195208
Alignment:
Q  208 aacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    |||| |||||||||| |||||||| |||||| || |||||||||||||||||| || |||||||||| |  |||||| ||||||||||||| |||||||    
T  7195112 aacaaccctcaaaat-aaaactcc-agtcctgaataccaaagctgagccacatccgcaaagctcctatccaaaagattattcagcttccacgacctctc 7195208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 259
Target Start/End: Original strand, 7391709 - 7391917
Alignment:
Q  48 gtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcaca 147  Q
    |||||||||||||| ||| |||| || ||| ||||||| |||||  |||||||||||| || ||||||| |  ||||| ||||||| ||| |||| |||     
T  7391709 gtatataggcggaaaacctgaaagtacacaacctaaaa-acacccatgaggacaacac-catcaaaatacatgtcaccacctaaaattgattcctccacg 7391806  T
Q  148 aaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg-aacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
     ||| || ||||||||| |||| ||||  ||   ||  ||||||||||||||| |||| | |||||||||||||||  || |||||| |||||||||| |    
T  7391807 gaaaagaccactgtaaaaacgaaatcccgcacagcctgtcgtcactactcacccccaaagaaacacccctcaaaat--aatctcccattcctcaacacga 7391904  T
Q  247 aagctgagccaca 259  Q
    |||| ||||||||    
T  7391905 aagcagagccaca 7391917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 31742552 - 31742504
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 79  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  31742552 tacaaacaaaaggcgccgtatataggcggaacacccgaaaacaaacacc 31742504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 298
Target Start/End: Original strand, 33258579 - 33258842
Alignment:
Q  28 aaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgc 127  Q
    |||||||||  |||||||||||||||| | | |||||||||||||||||||| ||||| ||| | |  | |||||||| || ||||||        || |    
T  33258579 aaatacaaataaaaggcgccgtatatatgtgaaacacccgaaaataaacaccataaaa-acatc-ccaaagacaacacccatcaaaat--------ccac 33258668  T
Q  128 ctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg----aacacccctcaaaatt 223  Q
    ||||||| ||   |||||| ||| ||| ||||||||| ||||||||||| | || |||||| ||||||||||| | || |    |||||||| |||||      
T  33258669 ctaaaacagatctcttcacgaaagcgaccactgtaaaaacgatatccaataccatccatcgccactactcacccctaaagaaaaaacaccccacaaaa-a 33258767  T
Q  224 aaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccac 298  Q
     ||||||| || ||| ||||||||||||||||||||| | | ||||||||  |||| | ||||||||||||||||    
T  33258768 caaactcctagacctgaacaccaaagctgagccacatccaacaagctcctccctgagaaatcattcagcttccac 33258842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 31722058 - 31721950
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgccta 130  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||    |||| ||||  || |  |||||| |||||||||| |||||||  ||||    
T  31722058 tacaaactaa-ggcgccgtatatagacggaacacccgaaaacaaacactaacaaaggcacccatgtgatcaacacccaccaaaataaacatcac--ccta 31721962  T
Q  131 aaactgactcct 142  Q
    ||||||||||||    
T  31721961 aaactgactcct 31721950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 8731328 - 8731278
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 79  Q
    ||||||||| ||||||||||||||||| || ||||||| ||||||||||||    
T  8731328 aatacaaacaaaaggcgccgtatatagacgaaacacccaaaaataaacacc 8731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 34378359 - 34378259
Alignment:
Q  159 tgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccac 258  Q
    |||||||||| |||||| || |  ||||||||||||||||||  ||| ||||| ||||||||| |||||||| ||  || ||||||| ||||||||||||    
T  34378359 tgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctcaaaa-taaaactctcaaaccccaacacccaagctgagccac 34378262  T
Q  259 att 261  Q
    |||    
T  34378261 att 34378259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 5656878 - 5656931
Alignment:
Q  122 caccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatcca 175  Q
    |||| ||||||||||||||||||| |||||  || |||||||||||||||||||    
T  5656878 caccacctaaaactgactccttcataaaaagaagaactgtaaacacgatatcca 5656931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 27713462 - 27713421
Alignment:
Q  30 atacaaactaaaggcgccgtatataggcggaacacccgaaaa 71  Q
    |||||||| ||||||||| |||||||||||||||||||||||    
T  27713462 atacaaacgaaaggcgccatatataggcggaacacccgaaaa 27713421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 698611 - 698522
Alignment:
Q  170 tatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacatt 261  Q
    |||||| |||| || ||||||||||||||||  ||| ||||||||  ||||  |||||||| ||| || ||||||| |||||||||||||||    
T  698611 tatccaccatcgccgatcgtcactactcacccacaaagaacaccctccaaa--taaaactctcagaccccaacacccaagctgagccacatt 698522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 18313425 - 18313504
Alignment:
Q  118 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 200  Q
    |||||||| |||||||| ||||||   | |||||| | ||| |||||||||||||||| || ||| |||||||||||||||||    
T  18313425 acatcaccacctaaaacagactcc---aaaaaaacaaacaccgtaaacacgatatccatcaccactcatcgtcactactcacc 18313504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 37108170 - 37108103
Alignment:
Q  48 gtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaata 116  Q
    |||||||||||||||| |  |||||||||||||||||| |||||  |||||| ||||| ||||||||||    
T  37108170 gtatataggcggaacatcaaaaaataaacaccctaaaa-acacccatgaggataacacccaccaaaata 37108103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 25657813 - 25657871
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacac 90  Q
    ||||||||| ||||||||||||||||| ||||| || |||||||||||| ||||| ||||    
T  25657813 tacaaactacaggcgccgtatataggcagaaca-cctaaaataaacaccataaaaaacac 25657871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 29087752 - 29087637
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| ||||||||||||||| ||| || || | ||||||||||||||||||| | || ||  | ||||||||| |||| ||||||| || ||||| |     
T  29087752 aaaaacaagcactgtaaacacggtattcaccaccgcccatcgtcactactcacccctaaaga--aaccctcaaaa-taaagctcccagaccccaacatct 29087656  T
Q  247 aagctgagccacattcgaa 265  Q
    ||| |||||||||| ||||    
T  29087655 aagttgagccacatacgaa 29087637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 5187332 - 5187219
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| |||||||||| ||||||  | | |||||||||||||||||| |||||| |||   |||||| ||||  |||| || || |||||||| ||    
T  5187332 aatacaaacaaaaggcgccgcatatagatgaagcacccgaaaataaacaccataaaag-cactcatgaggataacatccacccaagtacacatcaccacc 5187234  T
Q  129 taaaactgactcctt 143  Q
    |||| | ||||||||    
T  5187233 taaaccagactcctt 5187219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 23426680 - 23426646
Alignment:
Q  39 aaaggcgccgtatataggcggaacacccgaaaata 73  Q
    ||||| |||||||||||||||||||||||||||||    
T  23426680 aaaggtgccgtatataggcggaacacccgaaaata 23426646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 6159866 - 6159827
Alignment:
Q  39 aaaggcgccgtatataggcggaacacccgaaaataaacacc 79  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  6159866 aaaggcgctgtatataggcggaacaccc-aaaataaacacc 6159827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 29 - 268
Target Start/End: Original strand, 10248256 - 10248497
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaa-caccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgc 127  Q
    ||||||| ||||||||| |||||||||||||||||||| |||| ||| |||| ||||| |||||  |||||||||||| | |||||||| || ||||| |    
T  10248256 aatacaacctaaaggcgtcgtatataggcggaacaccctaaaaaaaaacaccttaaaaaacacccttgaggacaacacccgccaaaatacacgtcaccac 10248355  T
Q  128 ctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactca-ccaccaacg-aacacccctcaaaattaa 225  Q
    |||||||  |||||||||| ||||||| ||||||||| |||| |||| ||| ||||||||||||||||||| || |||||| ||||||| |||||||| |    
T  10248356 ctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcaccccccaacgaaacacccgtcaaaatt-a 10248454  T
Q  226 aactcccagtcctcaacaccaaagctgagccacattcgaaaag 268  Q
    |||||  ||||||||||||||||| |||||||||| |||||||    
T  10248455 aactctaagtcctcaacaccaaagttgagccacatccgaaaag 10248497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 12197757 - 12198036
Alignment:
Q  20 gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatac 119  Q
    |||||| | ||||||||||||||||| ||| ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||| ||| |||||| ||    
T  12197757 gaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaagacacctctggggacaacac-cacaaaaatacac 12197855  T
Q  120 atcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaa 219  Q
     ||||| |||| ||| ||| ||||||  || |||| ||||  ||| |||||||||| || ||||| ||||||||||||||| |||| |||        ||    
T  12197856 gtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaa--------aa 12197947  T
Q  220 aattaaaactcccagtcctcaacaccaaagctga---gccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    |||| ||||||||||  |||||||| |||| |||   | ||||| |||||||||| || | ||||||||||| | |||||| ||||||||    
T  12197948 aatt-aaactcccagaactcaacactaaagatgaggcggcacatccgaaaagctcatatccgaaagatcattgaacttccatcacctctc 12198036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 12442185 - 12442464
Alignment:
Q  20 gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatac 119  Q
    |||||| | ||||||||||||||||| ||| ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||| ||| |||||| ||    
T  12442185 gaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaagacacctctggggacaacac-cacaaaaatacac 12442283  T
Q  120 atcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaa 219  Q
     ||||| |||| ||| ||| ||||||  || |||| ||||  ||| |||||||||| || ||||| ||||||||||||||| |||| |||        ||    
T  12442284 gtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaa--------aa 12442375  T
Q  220 aattaaaactcccagtcctcaacaccaaagctga---gccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    |||| ||||||||||  |||||||| |||| |||   | ||||| |||||||||| || | ||||||||||| | |||||| ||||||||    
T  12442376 aatt-aaactcccagaactcaacactaaagatgaggcggcacatccgaaaagctcatatccgaaagatcattgaacttccatcacctctc 12442464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 205
Target Start/End: Original strand, 17656432 - 17656603
Alignment:
Q  34 aaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaa 133  Q
    |||| ||||||| ||||||||| |||||||||||||||| |||||||||||| |||||  |||||||||||| |||||||||  || |||||  ||||||    
T  17656432 aaacaaaaggcgtcgtatatagacggaacacccgaaaattaacaccctaaaa-acacccttgaggacaacacccaccaaaattcacgtcaccatctaaaa 17656530  T
Q  134 ctgactccttc-acaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaa 205  Q
    | ||||||||| | |||||||| ||||| ||| ||||||||||||| | | ||| ||||||||||||| ||||    
T  17656531 cagactccttcaagaaaaacgaccactgcaaaaacgatatccaacaccgctcattgtcactactcacccccaa 17656603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 8862314 - 8862481
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaa-taaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcct 129  Q
    ||||||| ||||||||||||||||| ||||||| ||||||| |||||||| ||||| ||||| |  |||||||||| ||| |||||| || ||||| |||    
T  8862314 tacaaacaaaaggcgccgtatatagacggaacatccgaaaaataaacaccataaaaaacaccccgaaggacaacacccacaaaaatacacgtcaccacct 8862413  T
Q  130 aaaactgactccttcacaaaaacgagcactgtaaacacgatatcc-aacatcacccatcgtcactact 196  Q
    ||||||||||| | ||| | ||| | || |||||| || |||||| |||| ||| | |||||||||||    
T  8862414 aaaactgactcttacacgagaacaaccattgtaaaaacaatatccaaacaccacacgtcgtcactact 8862481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 17656873 - 17656967
Alignment:
Q  208 aacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacct 303  Q
    ||||||||||||||||||| |||||| || | |||||||||| |||||||| |  ||||||||||||  |||||||||||||||||||||||||||    
T  17656873 aacacccctcaaaattaaa-ctcccaatcatgaacaccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacct 17656967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 260
Target Start/End: Original strand, 43312375 - 43312558
Alignment:
Q  74 aacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatc 173  Q
    |||| ||||||| ||||| ||||  ||||||| || ||||||| |  ||||| |||||| | ||||||| ||||||||||| ||||||||| ||||||||    
T  43312375 aacatcctaaaaaacaccgctgaa-acaacacccatcaaaatacatgtcaccacctaaatcagactcctacacaaaaacgaccactgtaaaaacgatatc 43312473  T
Q  174 caacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacat 260  Q
    | ||| ||  |||||||||||||| || |||||||| | | |||||| || ||||||| ||| ||||||| |||||||||| |||||    
T  43312474 ccacaccatacatcgtcactactcgcccccaacgaa-aactctcaaagtt-aaactcctagttctcaacatcaaagctgagtcacat 43312558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 293
Target Start/End: Original strand, 31207177 - 31207315
Alignment:
Q  154 agcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctga 253  Q
    ||||||||||||||  |||||| |||| |||||||||||||||||||  ||| ||||| ||||||||| |||||||||||  |  ||||||| |||||||    
T  31207177 agcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaaca-ccctcaaaa-taaaactcccatactccaacacccaagctga 31207274  T
Q  254 gccaca-ttcgaaaagctcctagctgaaagatcattcagct 293  Q
    |||||| |||||| ||| |||| | ||| | ||||||||||    
T  31207275 gccacatttcgaagagcacctaaccgaagggtcattcagct 31207315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 250
Target Start/End: Complemental strand, 20138726 - 20138598
Alignment:
Q  118 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 217  Q
    |||||||| |||||||| ||||||   | |||| | ||||||||||||||| |||||| || |  ||||||||||||||||||  ||| ||||| |||||    
T  20138726 acatcaccacctaaaacagactcc---aaaaaatcaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaaca-ccctc 20138631  T
Q  218 aaaattaaaactcccagtcctcaacaccaaagc 250  Q
    |||| |||||||||||| || ||||||| ||||    
T  20138630 aaaaataaaactcccagaccccaacacccaagc 20138598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 41790961 - 41791070
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacccta-aaagacacctctgaggacaacactcaccaaaatatacatcaccgcct 129  Q
    ||||||||||||  | |||||||||||||||||||| |||||||| |||| | ||||||||   | |||||||| | |||||||||| |||||||| |||    
T  41790961 tacaaactaaagatgtcgtatataggcggaacacccaaaaataaa-acccaataaagacactcataaggacaacccccaccaaaataaacatcaccccct 41791059  T
Q  130 aaaactgactc 140  Q
    |||||||||||    
T  41791060 aaaactgactc 41791070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 41893210 - 41893322
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| || |||||||||||| |||||| || |  ||||||||||||||||||  ||| ||||| |||| |||| || ||||||||| ||||||||||     
T  41893210 aaaaacaagaactgtaaacacggtatccaccaccgaccatcgtcactactcacccacaaagaaca-ccctgaaaa-tagaactcccagacctcaacaccc 41893307  T
Q  247 aagctgagccacatt 261  Q
    |||||||||||||||    
T  41893308 aagctgagccacatt 41893322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 37986666 - 37986778
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| |||| |||||||||| |||| | || |||||||||||| ||||||||  ||| ||||||||  ||||  |||||||||||| ||  ||||||     
T  37986666 aaaaacaagcattgtaaacacggtatctaccaccacccatcgtcattactcacccacaaagaacaccctccaaa--taaaactcccagaccgaaacaccc 37986763  T
Q  247 aagctgagccacatt 261  Q
    |||||||||||||||    
T  37986764 aagctgagccacatt 37986778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 298
Target Start/End: Original strand, 38577606 - 38577748
Alignment:
Q  156 cactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaact-cccagtcctcaacaccaaagctgag 254  Q
    ||||||||||||  ||||||  |||| |||||||||||||||| | |||| |||||| || ||||| ||||||| ||||| | |||||||| ||| || |    
T  38577606 cactgtaaacacagtatccacaatcatccatcgtcactactcatccccaaagaacactccacaaaa-taaaactccccagacttcaacacccaagttgcg 38577704  T
Q  255 ccacattcgaaaagctcctagctgaaagatcattcagcttccac 298  Q
    ||| |||||||||||||| | | ||| || ||| ||||||||||    
T  38577705 ccatattcgaaaagctccaaaccgaatgaacatgcagcttccac 38577748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 15821224 - 15821313
Alignment:
Q  184 catcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctccta 274  Q
    ||||| ||||||||||  | || |||||| ||||||||| ||||||||||| | |||||| |  |||||||||||||||||||||||||||    
T  15821224 catcgccactactcactccaaaagaacactcctcaaaat-aaaactcccagacttcaacatccgagctgagccacattcgaaaagctccta 15821313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 30235809 - 30235857
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 79  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||||||    
T  30235809 tacaaactaaaggctccgtatataggcggaacatccgaaaacaaacacc 30235857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 293
Target Start/End: Complemental strand, 9519764 - 9519627
Alignment:
Q  156 cactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccag-tcctcaacaccaaagctgag 254  Q
    ||||||||||||| |||||| || | |||||||||||||||||||  ||| ||||| ||||||||| |||||||| |||  || ||||||| ||||||||    
T  9519764 cactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaaca-ccctcaaaa-taaaactctcagacccccaacacccaagctgag 9519667  T
Q  255 ccaca-ttcgaaaagctcctagctgaaagatcattcagct 293  Q
    ||| | |||||| ||| |||| | ||| |||||| |||||    
T  9519666 ccatatttcgaagagcacctaaccgaatgatcatgcagct 9519627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 17720398 - 17720444
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 76  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  17720398 aatacaaactaaaggcgccgtatataggcagaacaccc-aaaataaac 17720444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 8862505 - 8862563
Alignment:
Q  242 caccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccacca 300  Q
    |||||||||||||||||||  |||||| || || | |||||||||||||||||||||||    
T  8862505 caccaaagctgagccacatctgaaaagttcatatccgaaagatcattcagcttccacca 8862563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 30235889 - 30235935
Alignment:
Q  96 aggacaacactcaccaaaatatacatcaccgcctaaaactgactcct 142  Q
    |||||||||| |||||||||| |||||||| ||||||||||||||||    
T  30235889 aggacaacacccaccaaaataaacatcaccccctaaaactgactcct 30235935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 298
Target Start/End: Original strand, 35816066 - 35816201
Alignment:
Q  159 tgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccac 258  Q
    |||||||||  ||||||  | |||||||| |||||||||||| |||| |||||||||||||||    ||||| | | | |||||| | || |||||||||    
T  35816066 tgtaaacacagtatccacaaccacccatcatcactactcacccccaaagaacacccctcaaaa----aactctctgacttcaacatccaaactgagccac 35816161  T
Q  259 attcgaaaagctcctagctgaaagatcattcagcttccac 298  Q
    ||||||||| ||| || | ||| || ||| ||||||||||    
T  35816162 attcgaaaaactcttaaccgaatgaacatgcagcttccac 35816201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 293
Target Start/End: Original strand, 24995202 - 24995348
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccag-tcctcaacacc 245  Q
    |||||| |||| |||||||||| |||||| || | ||||||||||||||||||   ||| ||||| ||||||||| ||||||||| ||  || |||||||    
T  24995202 aaaaacaagcattgtaaacacggtatccaccaccgcccatcgtcactactcacgcacaaagaaca-ccctcaaaa-taaaactcctagacccccaacacc 24995299  T
Q  246 aaagctgagccaca-ttcgaaaagctcctagctgaaagatcattcagct 293  Q
     ||||||||||| | |||||| ||| |||| | ||| |||||| |||||    
T  24995300 caagctgagccatatttcgaagagcacctaaccgaaggatcatgcagct 24995348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 9831694 - 9831741
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 76  Q
    |||||||||||||| || ||||||||||| || |||||||||||||||    
T  9831694 aatacaaactaaagacgtcgtatataggccgaccacccgaaaataaac 9831741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 22325826 - 22325931
Alignment:
Q  68 aaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacac 167  Q
    |||||||||| ||||||| |||||  | | ||| |||| ||||||||||||  |||||   |||||| |||||||| |||||||||| || |||||| ||    
T  22325826 aaaataaacatcctaaaa-acacccataatgacgacacccaccaaaatataggtcaccatataaaacagactccttaacaaaaacgaccattgtaaaaac 22325924  T
Q  168 gatatcc 174  Q
    |||||||    
T  22325925 gatatcc 22325931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 34388822 - 34388925
Alignment:
Q  154 agcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctga 253  Q
    |||| |||||||||| |||||| || | || ||||||||||||||||  ||| ||||| ||||||||| |||||||| ||  || ||||||| |||||||    
T  34388822 agcaatgtaaacacg-tatccaccaccgcctatcgtcactactcacccacaaagaaca-ccctcaaaa-taaaactctcataccccaacacccaagctga 34388918  T
Q  254 gccacat 260  Q
    |||||||    
T  34388919 gccacat 34388925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 5215000 - 5215044
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 76  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||    
T  5215000 tacaaactaa-ggcgccgtatataggcgaaacacccgaaaacaaac 5215044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 12898120 - 12898195
Alignment:
Q  184 catcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacatt 261  Q
    |||||||||||||||||  ||| ||||| ||||||||| ||||||||  || || ||||||| |||||||||||||||    
T  12898120 catcgtcactactcacccacaaagaaca-ccctcaaaa-taaaactctaagaccccaacacccaagctgagccacatt 12898195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 16457283 - 16457336
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 200  Q
    |||||| ||||||||||||||| |||||| || |  ||||||||||||||||||    
T  16457283 aaaaacaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacc 16457336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 36631123 - 36631039
Alignment:
Q  118 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaa 205  Q
    |||||||| |||||||| ||||||   | |||||| | ||||||||||||| |||||| || | |||||||| |||||||||| ||||    
T  36631123 acatcaccacctaaaacagactcc---aaaaaaacaaacactgtaaacacggtatccaccaccgcccatcgtaactactcacccccaa 36631039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 5221506 - 5221553
Alignment:
Q  41 aggcgccgtatataggcggaacacccgaaaataaacaccctaaaagaca 89  Q
    |||||||||||||||||||||||||| |||| |||||||  ||||||||    
T  5221506 aggcgccgtatataggcggaacaccc-aaaagaaacaccaaaaaagaca 5221553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 10552645 - 10552609
Alignment:
Q  43 gcgccgtatataggcggaacacccgaaaataaacacc 79  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  10552645 gcgccgtatataggcggaacatccgaaaacaaacacc 10552609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 302
Target Start/End: Original strand, 24324520 - 24324761
Alignment:
Q  60 aacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcac-aaaaacgagcac 158  Q
    ||||||||||||||||||| |||||| |||||  ||||||||||||||||||||||| || ||||| | |||||| ||||||||||| |||||||| ||     
T  24324520 aacacccgaaaataaacactctaaaa-acacccttgaggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacgaaaaacgaccat 24324618  T
Q  159 tgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg---aacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagc 255  Q
    |||||  ||||||||||||  || |||||||||||||||||| | || |   |||||||||||||| |||||||| | ||||| ||||||||||||||||    
T  24324619 tgtaagaacgatatccaac--ca-ccatcgtcactactcacccctaaagaaaaacacccctcaaaa-taaaactctccgtcctgaacaccaaagctgagc 24324714  T
Q  256 cacattcgaaaagctcctagctgaaagatcattcagcttccaccacc 302  Q
    ||||  ||||||||||||| | |||||||||||||||||||||||||    
T  24324715 cacagccgaaaagctcctaaccgaaagatcattcagcttccaccacc 24324761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 39 - 306
Target Start/End: Complemental strand, 3478729 - 3478465
Alignment:
Q  39 aaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgac 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   | ||| ||||||  |||||||| | |  |||||  || |||| |||    
T  3478729 aaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacaatccagagcacaacatccaccaaaaaacaagtcaccaactcaaacagac 3478630  T
Q  139 tccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcct 238  Q
      |||||| || |||| |||||||||  ||||||||| || || || ||||||||||||||| |||| |||||| |||||||||| ||||||||||||||    
T  3478629 gtcttcacgaatacga-cactgtaaaagcgatatccatcaccaaccgtcgtcactactcacc-ccaaagaacactcctcaaaatt-aaactcccagtcct 3478533  T
Q  239 caacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||||||||||||| |||||  |  |||||| ||  | | ||||||||||||||||||| |||||||||    
T  3478532 caacaccaaagcttagccaactcagaaaagttcacatccgaaagatcattcagcttccgccacctctc 3478465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 306
Target Start/End: Original strand, 6716427 - 6716705
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacac-ctct-gaggacaacactcaccaaaatatacatcaccg 126  Q
    |||||||| |||||| ||||||||||  ||||||||| ||||||||||||||||||| | || |||  ||||| |||||  ||| || || |   ||||     
T  6716427 aatacaaattaaaggggccgtatataaccggaacacctgaaaataaacaccctaaaaaaaacactcacgaggataacaccaacccaagtacatgacacca 6716526  T
Q  127 cctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg-aacacccctcaaaattaa 225  Q
    ||||||||  |||||||||| ||||||| ||||||||| ||| ||||  ||| ||||||| ||||||||||||| |||||| |||||||| ||||||| |    
T  6716527 cctaaaac--actccttcacgaaaacgaccactgtaaaaacggtatctcacaccacccattgtcactactcacccccaacgaaacaccccacaaaatt-a 6716623  T
Q  226 aactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctg-aaagatcattcagcttccaccacctctc 306  Q
    |||||||| |||||||||||||||||||||||||| || |||  || || | | |||||||| |||||||||||||||||||    
T  6716624 aactcccattcctcaacaccaaagctgagccacatccggaaaaatcttatccgaaaagatcaatcagcttccaccacctctc 6716705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 169 - 306
Target Start/End: Complemental strand, 8745405 - 8745266
Alignment:
Q  169 atatccaacatcacccatcgtcactactcaccaccaacgaa---cacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaa 265  Q
    |||||||||| || || ||||||||||||||| |||| |||   ||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||    
T  8745405 atatccaacaccatccttcgtcactactcacccccaaagaaaaacacccctcaaaattaaa-ctcccagtcttgaacaccaaagctgagccacatccgaa 8745307  T
Q  266 aagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||||||||| |||||||||||| |||||||||| |||||||    
T  8745306 aagctcctatctgaaagatcatgcagcttccacaacctctc 8745266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 33719355 - 33719185
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| || ||||| | |||||||||||||| | |||| |||||||||||||| ||||   |||||||||||| ||||||||||   |||||||||    
T  33719355 aatacaaacaaacggcgctgaatataggcggaacatc-gaaagtaaacaccctaaaa-acactcatgaggacaacacccaccaaaatacctatcaccgcc 33719258  T
Q  129 taaaactgactccttcaca-aaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 200  Q
    |||||| |||||||||||| ||||||| | ||||||| | |||||||||||  || |||||||||||||||||    
T  33719257 taaaaccgactccttcacaaaaaacgacctctgtaaaaatgatatccaacactactcatcgtcactactcacc 33719185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 293
Target Start/End: Original strand, 47325693 - 47325838
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| ||||||||||||||  |||||| |||| |||||||||||||||||||  ||| ||||| ||||||||| |||||||||||| || |||||||     
T  47325693 aaaaacaagcactgtaaacacagtatccatcatcgcccatcgtcactactcacccacaaagaaca-ccctcaaaa-taaaactcccagaccccaacaccc 47325790  T
Q  247 aagctgagccaca-ttcgaaaagctcctagctgaaagatcattcagct 293  Q
    ||||||||||||| |||||| ||| |||| | ||| ||||||||||||    
T  47325791 aagctgagccacatttcgaagagcacctaaccgaaggatcattcagct 47325838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 1321169 - 1321014
Alignment:
Q  44 cgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactcc-t 142  Q
    ||||||||||||||||||| |||||||||||||||||||||| || ||| ||| |||| ||  |||||||||| |||||||| |||||||| ||| || |    
T  1321169 cgccgtatataggcggaactcccgaaaataaacaccctaaaa-acccct-tgaagacaccatccaccaaaatacacatcaccacctaaaacagacccctt 1321072  T
Q  143 tcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 200  Q
    |||| ||| | | ||||||||| |||||||| || | ||| |||||||||||||||||    
T  1321071 tcacgaaagcaaccactgtaaaaacgatatctaataccactcatcgtcactactcacc 1321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 306
Target Start/End: Complemental strand, 34390202 - 34390077
Alignment:
Q  180 cacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctga 279  Q
    ||||||||||||||||||| | |||| |||||||||||||||| ||||||||||| |  ||||||| ||| ||||||||||| ||||||||||||   ||    
T  34390202 cacccatcgtcactactcatccccaaagaacacccctcaaaat-aaaactcccagactacaacacccaagttgagccacatttgaaaagctcctaatcga 34390104  T
Q  280 aagatcattcagcttccaccacctctc 306  Q
    | || ||| |||||||||| |||||||    
T  34390103 atgaacatgcagcttccacaacctctc 34390077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 31971942 - 31972054
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| ||||||||||||||| |||| | || | |||||||||||||||||||  ||| ||||||||  ||||  |||||||||||| || |||||||     
T  31971942 aaaaacaagcactgtaaacacggtatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaa--taaaactcccagaccccaacaccc 31972039  T
Q  247 aagctgagccacatt 261  Q
    |||||||||||||||    
T  31972040 aagctgagccacatt 31972054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 6492852 - 6492946
Alignment:
Q  60 aacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacga 154  Q
    |||||| ||||||||||||| ||||| |||||| |||||||||||  |||||||||  || ||||| |||||||| |||||||||| ||||||||    
T  6492852 aacacctgaaaataaacaccataaaaaacacctatgaggacaacatccaccaaaattcacgtcaccacctaaaacagactccttcataaaaacga 6492946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 260
Target Start/End: Complemental strand, 38306534 - 38306423
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| || |||| | |||||||||||| || |||||||||||||||||||||  ||| ||||| ||||||||| |||||||| ||| || |||||||     
T  38306534 aaaaacaagaactgcagacacgatatccaccaccacccatcgtcactactcacctacaaagaaca-ccctcaaaa-taaaactcacagaccccaacaccc 38306437  T
Q  247 aagctgagccacat 260  Q
    ||||||||||||||    
T  38306436 aagctgagccacat 38306423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 260
Target Start/End: Complemental strand, 3867415 - 3867278
Alignment:
Q  118 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 217  Q
    |||||||| || |||||  |||||||||||||||| |   |||||||||||||||||| || |  |||||||||||||||||| |||| ||||| |||||    
T  3867415 acatcaccacccaaaacaaactccttcacaaaaacaa---ctgtaaacacgatatccaccaccgtccatcgtcactactcacccccaaagaaca-ccctc 3867320  T
Q  218 aaaattaaaactcccagtcctcaacaccaaagctgagccacat 260  Q
    |||| ||||||| |||  |  ||||||| ||||||||||||||    
T  3867319 aaaa-taaaacttccatactccaacacccaagctgagccacat 3867278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 16828791 - 16828906
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| || | ||| |||| || ||||  |||||||||| |||||| |  |    
T  16828791 aatacaaacaaaatgcgccgtatataggcggaacacccgaaaataaacatcctagaa-atacccctgaagaaaacaaccaccaaaatacacatcatcatc 16828889  T
Q  129 taaaactgactccttca 145  Q
    |||||||| | ||||||    
T  16828890 taaaactggccccttca 16828906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 306
Target Start/End: Complemental strand, 23983530 - 23983320
Alignment:
Q  94 tgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcact 193  Q
    |||||||||||| |||||||||| ||| |||| |||||||| ||||| ||||| ||||| | ||||| ||| ||||||| ||  |  ||||||| |||||    
T  23983530 tgaggacaacacccaccaaaataaacaccaccacctaaaacagactcattcacgaaaacaaccactg-aaaaacgatatacataactacccatcatcact 23983432  T
Q  194 actcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagct 293  Q
    ||||||| | || ||| ||| ||| ||| | ||| || | ||||||| || ||||||||| ||| || |||||||||| ||   ||||||||||||| ||    
T  23983431 actcaccccaaaagaagaccgctctaaa-tgaaattctcggtcctcatcatcaaagctgaaccagatccgaaaagctcatattcgaaagatcattcaact 23983333  T
Q  294 tccaccacctctc 306  Q
      |||||||||||    
T  23983332 gtcaccacctctc 23983320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 42532950 - 42533117
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||| | ||||||||||||||||||||||||||| | ||||||||||||||||| || ||  ||| |||||||| ||| |||| |||| ||| | ||    
T  42532950 aatacaaccaaaaggcgccgtatataggcggaacacctggaaataaacaccctaaaa-actcccttgatgacaacacccacaaaaaaatacgtcatcacc 42533048  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactc 197  Q
    ||||||  ||   ||||| ||| | | || |||||| | || |||||| | ||||||||||||||||||    
T  42533049 taaaacatacctattcacgaaagcaaccattgtaaaaatgaaatccaataccacccatcgtcactactc 42533117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 306
Target Start/End: Original strand, 35745601 - 35745792
Alignment:
Q  118 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 217  Q
    |||||||| ||||| || ||| |||| ||| |||| | |||  ||||||| | ||||| |  ||||||||||||||||||||| |||| ||||||| |||    
T  35745601 acatcaccacctaagacagacaccttaacagaaacaaacacactaaacacaacatccacccccacccatcgtcactactcacccccaaagaacacctctc 35745700  T
Q  218 aaaattaaaactcccagtcctcaacaccaaagctgagccac-at---tcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    |||| ||||||   ||| | |||||||| |||||||||||| ||   |||||||||||||| | ||| || ||| |||||||||| |||||||    
T  35745701 aaaa-taaaacagtcagacttcaacacccaagctgagccactatatatcgaaaagctcctaaccgaatgaacatgcagcttccacaacctctc 35745792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 250
Target Start/End: Original strand, 44353345 - 44353473
Alignment:
Q  118 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 217  Q
    |||||||| |||||||| ||||||   | |||| | ||||||||||||||| |||||| || |  ||||||||||||||||||  ||| ||||| |||||    
T  44353345 acatcaccacctaaaacagactcc---aaaaaatcaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaaca-ccctc 44353440  T
Q  218 aaaattaaaactcccagtcctcaacaccaaagc 250  Q
    |||| |||||||||||| || ||||||| ||||    
T  44353441 aaaaataaaactcccagaccccaacacccaagc 44353473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 6585118 - 6585043
Alignment:
Q  184 catcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacat 260  Q
    ||||||||||||||||| ||||  | ||||||||||||| ||||||||||| | |||||||| ||||||||||||||    
T  6585118 catcgtcactactcacctccaaatagcacccctcaaaat-aaaactcccagacttcaacacccaagctgagccacat 6585043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 16954878 - 16954775
Alignment:
Q  30 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcct 129  Q
    |||||||  |||||| |||||||||||||||||| |||||||||||||| |||||| ||||| |||| || ||||  ||| |||||| || ||||| |||    
T  16954878 atacaaataaaaggcaccgtatataggcggaacatccgaaaataaacacgctaaaa-acacccctgaagaaaacaaccacaaaaatacacgtcaccacct 16954780  T
Q  130 aaaac 134  Q
    |||||    
T  16954779 aaaac 16954775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 293
Target Start/End: Original strand, 5860096 - 5860241
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| |||||| | |||||| ||| || |||  ||||||||||||||||| |  ||| |||||||| | ||||| ||||||||||| || |||||||     
T  5860096 aaaaacaagcactattaacacggtattcaccattgcccatcgtcactactcatccacaaagaacaccc-tgaaaat-aaaactcccagaccccaacaccc 5860193  T
Q  247 aagctgagccaca-ttcgaaaagctcctagctgaaagatcattcagct 293  Q
    ||||||||||||| |||||| ||| |||| ||||| |||||| |||||    
T  5860194 aagctgagccacatttcgaagagcacctaactgaaggatcatgcagct 5860241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 28534195 - 28534240
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataa 74  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||    
T  28534195 aatacaaataaaaggcgccgtatataggcggaacacccgaaaataa 28534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 13312227 - 13312180
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 76  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||    
T  13312227 aatacaaactaaaggctttgtatataggcggaacacccgaaaataaac 13312180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 28534277 - 28534336
Alignment:
Q  87 acacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcac 146  Q
    ||||| ||||||||||||| |||||||||| |||||||| |||||||| ||||| |||||    
T  28534277 acacccctgaggacaacacccaccaaaataaacatcaccacctaaaacagactctttcac 28534336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 36674859 - 36674809
Alignment:
Q  30 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 80  Q
    |||||||| ||||||| ||||||||||||||| | ||||||||||||||||    
T  36674859 atacaaacaaaaggcgtcgtatataggcggaatatccgaaaataaacaccc 36674809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 22567783 - 22567818
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacac 64  Q
    ||||||||| ||||||||||||||||||||||||||    
T  22567783 aatacaaacaaaaggcgccgtatataggcggaacac 22567818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 9107547 - 9107481
Alignment:
Q  23 tcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagaca 89  Q
    ||||| ||||||||  |||||||||||||| ||||||||| | | ||||| |||||| |||||||||    
T  9107547 tcaaagaatacaaatcaaaggcgccgtataaaggcggaacgcacaaaaatgaacaccataaaagaca 9107481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 26385858 - 26385903
Alignment:
Q  39 aaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 85  Q
    |||| ||||||||||||||||||||||| |||||||||||| |||||    
T  26385858 aaagacgccgtatataggcggaacaccc-aaaataaacaccataaaa 26385903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 8745521 - 8745469
Alignment:
Q  27 aaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 80  Q
    |||||| |||| | || |||||||||||||||||||||||||||| ||||||||    
T  8745521 aaaatagaaacaagagacgccgtatataggcggaacacccgaaaa-aaacaccc 8745469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 25438748 - 25438691
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaa-taaacaccctaaaa 85  Q
    ||||||||| | | || |||||||||||||||||||||||||| |||||||| |||||    
T  25438748 aatacaaacgatatgccccgtatataggcggaacacccgaaaagtaaacaccataaaa 25438691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 42533158 - 42533219
Alignment:
Q  243 accaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctc 304  Q
    ||||||||||| ||| || |||||||||| || |||||||||| ||||| | ||||||||||    
T  42533158 accaaagctgatccatatccgaaaagctcttatctgaaagatcgttcagttgccaccacctc 42533219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 23983634 - 23983574
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagaca 89  Q
    |||||||| |||||||  |||||||||||||| || || |||||||||| | |||||||||    
T  23983634 aatacaaattaaaggcatcgtatataggcggagcatccaaaaataaacatcataaaagaca 23983574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 293
Target Start/End: Complemental strand, 37795255 - 37795117
Alignment:
Q  154 agcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctga 253  Q
    ||||||||||||||| |||||| || | |||||| | |||||| | |  ||| ||||| ||||||||| |||||||| ||  || ||||||| |||||||    
T  37795255 agcactgtaaacacggtatccaccaccgcccatcattactacttaaccacaaagaaca-ccctcaaaa-taaaactctcaaaccccaacacccaagctga 37795158  T
Q  254 gccaca-ttcgaaaagctcctagctgaaagatcattcagct 293  Q
    |||||| |||||| ||| |||| | ||| |||||| |||||    
T  37795157 gccacagttcgaagagcacctaaccgaaggatcatgcagct 37795117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 29 - 306
Target Start/End: Complemental strand, 37097 - 36822
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| |||| ||| |||||||||||||||| ||||||||||||||| ||||| |||||  ||||||| |||| || ||||||| || ||||| ||    
T  37097 aatacaaacaaaagacgctgtatataggcggaacatccgaaaataaacaccataaaaaacacccatgaggaccacacccaacaaaatacacgtcaccacc 36998  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg---aacacccctcaaaattaa 225  Q
    |||||| |||||||||||  |||| | ||||||||| |||| |||||||  || ||| |||||||||||||| |||| |   ||||||||| ||||  |     
T  36997 taaaacagactccttcac-gaaaccaccactgtaaaaacgacatccaac--catccaccgtcactactcacccccaaagaaaaacacccctaaaaa--at 36903  T
Q  226 aactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||| ||| ||||| |||||||||||||||||||| |||||||||||||| | |||||| |||||| |||||||||| ||||    
T  36902 aaccccccgtcctgaacaccaaagctgagccacaatcgaaaagctcctaaccgaaagaccattcaacttccaccacatctc 36822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 29 - 305
Target Start/End: Original strand, 16832711 - 16832988
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| |||||||| | ||||||||||||||||  |||||||||||||||||| || |  ||||||||||||| |||| ||||| || ||||| ||    
T  16832711 aatacaaacaaaaggcgctgcatataggcggaacaccaaaaaataaacaccctaaaa-actctcctgaggacaacacccacc-aaataaacgtcaccacc 16832808  T
Q  129 taaaactgactccttcac-aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg----aacacccctcaaaatt 223  Q
    ||||||  | |||| ||| |||||||| | ||||||| | ||||||||||| ||||| ||||||||||||||| |||| |    ||||||||||||||||    
T  16832809 taaaacatattcctgcacgaaaaacgaccgctgtaaaaaagatatccaacaccacccgtcgtcactactcacc-ccaaagaaaaaacacccctcaaaatt 16832907  T
Q  224 aaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctct 305  Q
     |||||| ||||| | |||||||||| |||||||||| |||||||||| || |  ||||||||||||||||| | |||||||    
T  16832908 -aaactcacagtcttgaacaccaaagttgagccacatccgaaaagctcatatcccaaagatcattcagcttcaatcacctct 16832988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 41 - 306
Target Start/End: Original strand, 19311069 - 19311342
Alignment:
Q  41 aggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactc 140  Q
    |||| ||||| |||||||||||| |||||| |||||||||||||| || || ||| ||| ||||| |||||||||| || ||||| ||  |||| || ||    
T  19311069 aggcaccgtaaataggcggaacatccgaaattaaacaccctaaaa-actcccctggggataacacccaccaaaatacacgtcaccaccataaacagattc 19311167  T
Q  141 cttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaaca-cccctcaaa--------attaaaactcc 231  Q
    |||||| ||||||||||||||||| |||||||||||||||  ||| ||||||| |||||| |||| ||| | |||||||||         | | ||||||    
T  19311168 cttcacgaaaacgagcactgtaaaaacgatatccaacatcctccaccgtcactgctcacccccaaagaataccccctcaaacgagcaccgtaagaactcc 19311267  T
Q  232 cagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
     |||||||||||||||||| || |||||||| |||||||| || |  ||||||||| ||||||||||||||||||    
T  19311268 tagtcctcaacaccaaagccgaaccacattcaaaaagctcttaaccaaaagatcatacagcttccaccacctctc 19311342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 47 - 306
Target Start/End: Original strand, 41117677 - 41117935
Alignment:
Q  47 cgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcac 146  Q
    ||||||||||||||||||||||||||||||||||||||  |||||  |||||||||||| |||||||||| | |||||| |||| ||| ||||| | |||    
T  41117677 cgtatataggcggaacacccgaaaataaacaccctaaataacacc-atgaggacaacacccaccaaaatacatatcaccacctagaacagactcatgcac 41117775  T
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccac---caacgaacacccctcaaaattaaaactcccagtcctcaaca 243  Q
     ||||| | |  |||||| ||||||||||||  |||||||||||| |||||||| |     |  ||||||||||| || ||||||||||  || | ||||    
T  41117776 gaaaacaaccgttgtaaaaacgatatccaac--cacccatcgtcattactcacccctttagaaaaacacccctcagaa-taaaactcccgatcatgaaca 41117872  T
Q  244 ccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||||| ||||||||| | || ||||||||||   |||||||||||||||||||||||||||||    
T  41117873 ccaaacctgagccacctccgcaaagctcctattcgaaagatcattcagcttccaccacctctc 41117935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 112 - 306
Target Start/End: Complemental strand, 48098641 - 48098446
Alignment:
Q  112 aaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaa-- 209  Q
    ||||| || ||||| ||||||||  |||| ||||||||||||| ||||||||| |||||||||| ||  |||| ||||||||||||||| |||| |||      
T  48098641 aaatacacgtcaccacctaaaac--actctttcacaaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaaaa 48098544  T
Q  210 --cacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
      ||||||| |||| |||| ||||||||| | |||||||||| |||||||||| ||||||||||||| |||||||||| |||| |||||||||||||||    
T  48098543 tacacccctaaaaaataaa-ctcccagtcttaaacaccaaagttgagccacatccgaaaagctcctatctgaaagatcgttcatcttccaccacctctc 48098446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 306
Target Start/End: Original strand, 38636927 - 38637201
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgccta 130  Q
    ||||||| | ||||||||||| ||||||||||||| ||||||||||||| ||||  | ||| | ||||||||||| ||| |||||| |  ||||| ||||    
T  38636927 tacaaacaagaggcgccgtat-taggcggaacacctgaaaataaacaccttaaataaaacccccgaggacaacacccacgaaaatacatgtcaccaccta 38637025  T
Q  131 aaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccacc---aacgaacacccctcaaaattaaaa 227  Q
    ||||  |||||||||| ||||| | | ||||||| | ||||||||||  ||||||||||||||||||||| ||    |  |||||||||  | | |||||    
T  38637026 aaacaaactccttcacgaaaacaaccgctgtaaaaatgatatccaac--cacccatcgtcactactcacccccttagaaaaacacccct-tatactaaaa 38637122  T
Q  228 ctcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    |||||| || | |||||||||| ||| || | |  | ||||||| || |||||||||||||||||||||||||||||||    
T  38637123 ctcccaatcttgaacaccaaagttgaaccgcctcggcaaagctcttatctgaaagatcattcagcttccaccacctctc 38637201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 290
Target Start/End: Complemental strand, 49747917 - 49747657
Alignment:
Q  30 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcct 129  Q
    |||||||| |||| |  |||||||| |||||||| || |||||||||||| ||||| ||||||||||||||||||| |||||||||  |  ||||| |||    
T  49747917 atacaaacaaaagacatcgtatatatgcggaacatccaaaaataaacaccataaaaaacacctctgaggacaacacccaccaaaattcatgtcaccacct 49747818  T
Q  130 aaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaa--cacccctcaaaattaaaa 227  Q
    ||||| ||||| ||||| ||||||| || |||||| |||| |||||||| | ||||| ||||||||||||| | || |||   ||| ||| ||| | |||    
T  49747817 aaaacagactctttcacgaaaacgaccattgtaaaaacga-atccaacaccgcccattgtcactactcacccctaaagaaacaacctctctaaaat-aaa 49747720  T
Q  228 ctcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattca 290  Q
    || ||| ||||  ||||||||||| |||||  | |||||||||| ||  ||||||||||||||    
T  49747719 cttccaatccttgacaccaaagctaagccatctccgaaaagctcatatatgaaagatcattca 49747657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 156 - 306
Target Start/End: Original strand, 31050478 - 31050627
Alignment:
Q  156 cactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagc 255  Q
    |||||||||||| | ||||| ||||| |||||||||||||||||| |||| ||||||||||||||| ||||||  |||| | |||||||| ||||| |||    
T  31050478 cactgtaaacacaacatccaccatcatccatcgtcactactcacccccaaggaacacccctcaaaa-taaaacagccagacttcaacacccaagcttagc 31050576  T
Q  256 cacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    |||| |||||||||||||| | ||| || ||| |||||||||| |||||||    
T  31050577 cacaatcgaaaagctcctaaccgaatgaacatgcagcttccacaacctctc 31050627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 306
Target Start/End: Original strand, 19814910 - 19815188
Alignment:
Q  31 tacaaactaaa-ggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccg--- 126  Q
    ||||||||||| ||||  ||||||| || |||||||| |||||||||| | |||||||||| |   |||||||||| |||||||| | || |||||        
T  19814910 tacaaactaaaaggcgttgtatataagcagaacacccaaaaataaacatcataaaagacactttcaaggacaacacccaccaaaaaacacgtcaccagta 19815009  T
Q  127 cctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaa 226  Q
    ||| |||| |||  |||||| |||| || ||| ||||| | ||||||||| | || || | ||||||||||||| |||| ||||||  ||||| ||||||    
T  19815010 cctcaaacagacgtcttcacgaaaatgaccacggtaaaaatgatatccaataccatccgttgtcactactcacccccaaagaacacttctcaagattaaa 19815109  T
Q  227 actcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
     ||| |||||||||||||||||| | ||||||||  |||||| ||||| | ||||||||||| ||||||||||| |||||    
T  19815110 -ctctcagtcctcaacaccaaagtttagccacatcggaaaagttcctatccgaaagatcatttagcttccaccatctctc 19815188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 298
Target Start/End: Complemental strand, 25753500 - 25753293
Alignment:
Q  93 ctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcac 192  Q
    ||||||||||||| |||||||||| |  ||| | ||||||||  |||||||||| |||| |  |||||||||  || ||||||||||||  |||||||||    
T  25753500 ctgaggacaacacccaccaaaatacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatccaacatcattcatcgtcac 25753401  T
Q  193 tactcaccaccaacg---aacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattc 289  Q
    |||||||| |||| |   |||||||||||||||| |||||  ||||||| |||| ||||| ||| |||||| | ||||||| ||  | ||||||||||||    
T  25753400 tactcacccccaaagaaaaacacccctcaaaatt-aaactttcagtcctgaacatcaaagttgaaccacatccaaaaagcttctctccgaaagatcattc 25753302  T
Q  290 agcttccac 298  Q
    |||||||||    
T  25753301 agcttccac 25753293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 306
Target Start/End: Original strand, 35341141 - 35341304
Alignment:
Q  140 ccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctc 239  Q
    |||| |||||||| | ||||||||||||  |||||   | ||||||||||||||||||||| |||  |||||||||||||||| ||||||||||  | ||    
T  35341141 ccttaacaaaaacaaacactgtaaacacagtatccgcaaccacccatcgtcactactcacc-ccagagaacacccctcaaaat-aaaactcccaaacttc 35341238  T
Q  240 aacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||||||||| |||||||||||||||||||||| || ||||| || ||| |||||||||| |||||||    
T  35341239 aacaccaaa-ctgagccacattcgaaaagctcataactgaatgaacatgcagcttccacaacctctc 35341304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 300
Target Start/End: Complemental strand, 19673377 - 19673219
Alignment:
Q  141 cttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctca 240  Q
    |||||| |||| || |||||||||  | |||||||||| || || ||||||||||||||| |||| |||||| |||||||||| |||||| |||||||||    
T  19673377 cttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcacccccaaagaacactcctcaaaatt-aaactctcagtcctca 19673279  T
Q  241 acaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccacca 300  Q
    ||||||||| | |||||||| ||||||| || || |  ||| |||||| |||||||||||    
T  19673278 acaccaaagtttagccacatccgaaaagttcatatccaaaatatcatttagcttccacca 19673219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 47 - 199
Target Start/End: Original strand, 39420745 - 39420896
Alignment:
Q  47 cgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcac 146  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||   |||| | ||||| |||||||||| || |||||  ||||||||||||||| |||    
T  39420745 cgtatataggcggaacacccgaaaatgaacaccataaaaaacactcatgagcataacac-caccaaaatacacgtcaccatctaaaactgactcctacac 39420843  T
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcac 199  Q
     | ||| | ||| ||| | ||||||||||||| ||||| ||||||||||||||    
T  39420844 gagaacaaccaccgtataaacgatatccaacaccacccgtcgtcactactcac 39420896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 274
Target Start/End: Original strand, 22810864 - 22811096
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| |||||||||||||||| |||||| | |||||| |||||||||||            ||||||  ||| |||||||||| || ||||| ||    
T  22810864 aatacaaac-aaaggcgccgtatataagcggaatatccgaaagtaaacacccta------------gaggacctcacccaccaaaatacacgtcacctcc 22810950  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg--aacacccctcaaaattaaa 226  Q
    |||||| |||| |||||| ||| ||| ||||||||| ||||||||| ||  || |||||||||||||||||| |||| |  || ||| || |||  ||||    
T  22810951 taaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcctac--catccatcgtcactactcacccccaaagaaaaaacctctaaaagataaa 22811048  T
Q  227 actcccagtcctcaacaccaaagctgagccacattcgaaaagctccta 274  Q
    || | | ||||| ||||||||||||||||||||| || ||| ||||||    
T  22811049 accctccgtcctgaacaccaaagctgagccacatccgcaaaactccta 22811096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 49528282 - 49528187
Alignment:
Q  208 aacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctc 304  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||| |||||| || |||||| ||| | ||||||||||||| |||||||||||||    
T  49528282 aacacccctcaaaat-aaaactctcagtcttgaacaccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccaccacctc 49528187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 305
Target Start/End: Complemental strand, 2826020 - 2825899
Alignment:
Q  182 cccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaa 281  Q
    ||||||||||||||||||| |||  |||||||||||||||| ||||||||||  | |||||||| || |||| |||| ||||||||||||||| | |||     
T  2826020 cccatcgtcactactcacc-ccagagaacacccctcaaaat-aaaactcccaaacttcaacacccaaactgaaccaccttcgaaaagctcctaaccgaat 2825923  T
Q  282 gatcattcagcttccaccacctct 305  Q
    || ||| |||||||||| ||||||    
T  2825922 gaacatgcagcttccacaacctct 2825899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 28967265 - 28967209
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 85  Q
    ||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  28967265 aatacaaacgaaaggcgctgtatataggcggaacacctgaaaataaacaccctaaaa 28967209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 48098698 - 48098645
Alignment:
Q  27 aaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 80  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  48098698 aaaatacaaacaaaagacgcagtatataggcggaacacccgaaaataaacaccc 48098645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 39420914 - 39420981
Alignment:
Q  239 caacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||||||| ||||| ||||||||| |||||||||||| |||||| |||| |||| ||||||||||||||    
T  39420914 caacaccgaagctaagccacatttgaaaagctcctatctgaaatatcaatcagtttccaccacctctc 39420981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 53823151 - 53823281
Alignment:
Q  67 gaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaaca 166  Q
    ||||||||||||||||||| | ||| ||||||| ||||| |||||||||| || ||| | ||   ||| |||||||||||||||| |  |||  |||| |    
T  53823151 gaaaataaacaccctaaaaaatacccctgaggataacacccaccaaaatacacgtcatcacc---aacagactccttcacaaaaatgtccaccataaaaa 53823247  T
Q  167 cgatatccaacatcacccatcgtcactactcacc 200  Q
    |||||||| ||| |||||| || |||||||||||    
T  53823248 cgatatcccacaccacccaccgacactactcacc 53823281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 53823314 - 53823389
Alignment:
Q  232 cagtcctcaacaccaaagctgagccacattcgaaaagctccta-gctgaaagatcattcagcttccaccacctctc 306  Q
    ||||||||||||||||||||||||||||| | |||||||||||  |  |||||||| ||| |||||||||||||||    
T  53823314 cagtcctcaacaccaaagctgagccacatcctaaaagctcctatccaaaaagatcaatcaacttccaccacctctc 53823389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 261
Target Start/End: Complemental strand, 8255299 - 8255188
Alignment:
Q  148 aaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaa 247  Q
    ||||| ||||||||||||||  |||||| ||   |||||||||||||||||||  ||| ||||| ||||||||| |||||||| ||| ||  |||||| |    
T  8255299 aaaacaagcactgtaaacacagtatccaccacatcccatcgtcactactcacccacaaagaaca-ccctcaaaa-taaaactcacagaccctaacaccca 8255202  T
Q  248 agctgagccacatt 261  Q
    ||||||||||||||    
T  8255201 agctgagccacatt 8255188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 261
Target Start/End: Complemental strand, 8268717 - 8268606
Alignment:
Q  148 aaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaa 247  Q
    ||||| ||||||||||||||  |||||| ||   |||||||||||||||||||  ||| ||||| ||||||||| |||||||| ||| ||  |||||| |    
T  8268717 aaaacaagcactgtaaacacagtatccaccacatcccatcgtcactactcacccacaaagaaca-ccctcaaaa-taaaactcacagaccctaacaccca 8268620  T
Q  248 agctgagccacatt 261  Q
    ||||||||||||||    
T  8268619 agctgagccacatt 8268606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 46487670 - 46487621
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacac 78  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  46487670 aatacaaactaaaggcatcgtatataggcggaacatccgaaaataaacac 46487621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 35336964 - 35336914
Alignment:
Q  25 aaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaa 75  Q
    ||||| ||||||| ||||||||||||||||| ||||||| |||||||||||    
T  35336964 aaaaagtacaaacaaaaggcgccgtatatagacggaacatccgaaaataaa 35336914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 43373864 - 43373910
Alignment:
Q  96 aggacaacactcaccaaaatatacatcaccgcctaaaactgactcct 142  Q
    |||||||||| |||||||||| |||||||| ||||||||||||||||    
T  43373864 aggacaacacccaccaaaataaacatcaccccctaaaactgactcct 43373910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 42719546 - 42719494
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccct 81  Q
    ||||||||| |||| ||||||||||| |||||| ||| |||||||||||||||    
T  42719546 aatacaaacaaaagacgccgtatataagcggaaaacctgaaaataaacaccct 42719494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 8705952 - 8706061
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| ||||||||||||||  |||||| ||   |||||||||||||| ||||  ||| ||||| ||||||||| ||||||||  || || |||||||     
T  8705952 aaaaacaagcactgtaaacacagtatccaccactgcccatcgtcactacccacccacaaagaaca-ccctcaaaa-taaaactcttagaccccaacaccc 8706049  T
Q  247 aagctgagccac 258  Q
    ||||||||||||    
T  8706050 aagctgagccac 8706061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 25754265 - 25754199
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctga 96  Q
    ||||||||  ||| ||||||||||||| ||||||| | ||||||||||||| ||||| ||||||||||    
T  25754265 aatacaaataaaaagcgccgtatatagacggaacatctgaaaataaacaccataaaa-acacctctga 25754199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 38930177 - 38930122
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccg-aaaataaacaccctaaaa 85  Q
    ||||||| ||||| |||||||||||| |||||||||| |||||||||||| |||||    
T  38930177 tacaaacgaaaggagccgtatataggtggaacacccgaaaaataaacaccataaaa 38930122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 35947998 - 35948044
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaa 75  Q
    ||||||||| |||| |||| |||||| ||||||||||||||||||||    
T  35947998 aatacaaacaaaagacgccatatataagcggaacacccgaaaataaa 35948044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 2061542 - 2061627
Alignment:
Q  48 gtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaa 133  Q
    |||||||||||||||| | || ||||||||| |||||| | ||| |||||| |||||| || ||||||| |  ||||| |||||||    
T  2061542 gtatataggcggaacatctgataataaacacactaaaaaatacccctgagggcaacacccatcaaaatacaagtcaccacctaaaa 2061627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 20464869 - 20464796
Alignment:
Q  141 cttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacaccc 214  Q
    ||||| |||||| | | ||||||||||| |||||| || | ||||||||||||||||||| ||||  |||||||    
T  20464869 cttcaaaaaaacaaaccctgtaaacacggtatccaccaccgcccatcgtcactactcacccccaaataacaccc 20464796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 19432426 - 19432386
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaa 71  Q
    ||||||| ||||||||||||||||| ||||||| |||||||    
T  19432426 tacaaacaaaaggcgccgtatatagacggaacatccgaaaa 19432386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 30964702 - 30964624
Alignment:
Q  155 gcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagt 235  Q
    |||||||||| ||||||| || || | |||||| ||||||||||||  ||| ||||| ||||||||| |||||||||||||    
T  30964702 gcactgtaaatacgatattcaccaccgcccatcatcactactcacccacaaagaaca-ccctcaaaa-taaaactcccagt 30964624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 43373784 - 43373824
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaa 71  Q
    |||||||||||||||  ||||||||||| ||||||||||||    
T  43373784 tacaaactaaaggcgttgtatataggcgaaacacccgaaaa 43373824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 29 - 306
Target Start/End: Complemental strand, 58518 - 58240
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactca-ccaaaatatacatcaccgc 127  Q
    |||| |||| ||||||||||||||||||  |||||||| |||||||| ||||||||| |||||  |||| ||| || ||| ||||| || |||||||| |    
T  58518 aatagaaacaaaaggcgccgtatataggtagaacacccaaaaataaataccctaaaa-acacccatgagaacacca-tcagccaaagtacacatcaccac 58421  T
Q  128 ctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacc---cctcaaaatta 224  Q
    | ||||| ||||||||||| ||||||| || ||||||   |||||||||||  |||| ||||||||||||||  |||| ||||| |   |||||||||||    
T  58420 caaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaagaacaacactcctcaaaatta 58321  T
Q  225 aaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    || ||| ||||||  |||||||||||||||||||||||||||||||| || | ||||||| |||||||||||| || |||||    
T  58320 aa-ctctcagtcccgaacaccaaagctgagccacattcgaaaagctcttatccgaaagataattcagcttccatcatctctc 58240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 304
Target Start/End: Complemental strand, 4171134 - 4170860
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcac-caaaatatacatcaccgc 127  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| ||| |  |||||||||||| |||  ||||||||| ||| | |    
T  4171134 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa-acatcattgaggacaacacccacaaaaaatatacgtcatcac 4171036  T
Q  128 ctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccac---caacgaacacccctcaaaatta 224  Q
    ||||||  ||||||||||| |||| || || |||| | | ||||||||||  || |||||||||||||||||| |   | |  |||||||||| ||| ||    
T  4171035 ctaaaatagactccttcacgaaaatgaccattgtataaatgatatccaac--catccatcgtcactactcacccccttctaaaaacacccctc-aaagta 4170939  T
Q  225 aaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctc 304  Q
    |||||| ||||||| |||||||||||||||||||||    |||||||||| |  |||||||||| |||||||||||||||    
T  4170938 aaactctcagtccttaacaccaaagctgagccacatctccaaagctccta-cccaaagatcattaagcttccaccacctc 4170860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 29 - 303
Target Start/End: Complemental strand, 37123760 - 37123497
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| ||||||| | || |||| |||||||||||||||||||||||||            ||| |||||||| |||||||||| ||||||||       
T  37123760 aatacaaacaaaaggcgtcctacatagtcggaacacccgaaaataaacaccct------------tgaagacaacacccaccaaaatacacatcaccata 37123673  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccacca---acgaacacccctcaaaattaa 225  Q
    |||||  |||| |||||| ||||||| ||||||||| ||||||||||||| ||||  | ||||||||||||| |||   | ||||||||||| ||||| |    
T  37123672 taaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccacctgttgtcactactcaccgccaaagatgaacacccctccaaatt-a 37123574  T
Q  226 aactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacct 303  Q
    ||||| ||||||  |||| ||||||||||||||| ||||||||||| |  |||||||||||| |||||||||||||||    
T  37123573 aactctcagtccagaacatcaaagctgagccaca-tcgaaaagctcatgtctgaaagatcatacagcttccaccacct 37123497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 29 - 299
Target Start/End: Original strand, 50518780 - 50519047
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| |||||  ||||||| |||| || ||||||| || |||||  |    
T  50518780 aatacaaacaaaaggtgtcgtatataggcggaacacccgaaaataaacaccctaaaa-acacccatgaggaccacacccaacaaaatacacctcaccatc 50518878  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg---aacacccctcaaaattaa 225  Q
    |||||| |||||||||||  | || | ||||||||| |||||||| |||   | |||||||||||||||||| |||| |   ||||||||| |||| | |    
T  50518879 taaaacagactccttcac-gataccaccactgtaaaaacgatatctaac--gatccatcgtcactactcacctccaaagaaaaacacccctaaaaaat-a 50518974  T
Q  226 aactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccacc 299  Q
    || |||  ||||| |||||||||||||||||||| || |||| |||||| |  ||||| |||||||||||||||    
T  50518975 aattcctcgtcctgaacaccaaagctgagccacaatc-aaaaactcctaaccaaaagaccattcagcttccacc 50519047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 149 - 306
Target Start/End: Complemental strand, 14879708 - 14879549
Alignment:
Q  149 aaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg---aacacccctcaaaattaaaactcccagtcctcaacacc 245  Q
    |||||| ||||| ||| ||||||||||||| ||| ||||||||||| ||||| | || |   |||||||||||||||| |||||||||| | | ||||||    
T  14879708 aaacgaccactgaaaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaaaaacacccctcaaaatt-aaactcccagacttgaacacc 14879610  T
Q  246 aaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||| | ||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||    
T  14879609 aaacccgagccacatccgaaaagctcctatctgaaagatcattaagcttccaccacctctc 14879549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 23328167 - 23328284
Alignment:
Q  156 cactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagc 255  Q
    |||||||| ||| |||||||  | ||||||||||||||||||||| |||| ||||||| |||||||| ||||||||||| | |||||||| |||||||||    
T  23328167 cactgtaagcacaatatccacaaccacccatcgtcactactcacccccaaagaacaccactcaaaat-aaaactcccagacttcaacacccaagctgagc 23328265  T
Q  256 cacattcgaaaagctccta 274  Q
    |||||||||||||||||||    
T  23328266 cacattcgaaaagctccta 23328284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 306
Target Start/End: Complemental strand, 45399060 - 45398911
Alignment:
Q  156 cactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagc 255  Q
    |||||||||||| |||||||  |||| |||||||||||||||||| |||||||||||||| ||||| || ||||||||  | |||||||| ||| || ||    
T  45399060 cactgtaaacacaatatccacaatcatccatcgtcactactcacccccaacgaacaccccacaaaa-tagaactcccaaacttcaacacctaagttgcgc 45398962  T
Q  256 cacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    |||||||||||||||| || | ||| || ||| |||||||||| |||||||    
T  45398961 cacattcgaaaagctcataaccgaatgaacatgcagcttccacaacctctc 45398911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 305
Target Start/End: Original strand, 28937427 - 28937681
Alignment:
Q  43 gcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactcct 142  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||| |  | |||||||| |||||||||        || |||||||| ||| |||    
T  28937427 gcgccgtatataagcggaacacccgaaaataaacaccctaaaa-acacc-ccaatgacaacacccaccaaaat--------ccacctaaaacagacccct 28937516  T
Q  143 tcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccacc----aacgaacacccctcaaaattaaaactcccagtcct 238  Q
    |||| |||  || ||||||||| ||||||||||| | ||||||||| ||||||||||| ||    ||  ||||||||| ||||   ||||||| || |||    
T  28937517 tcacgaaagtgaccactgtaaaaacgatatccaataccacccatcgccactactcacctccaagtaaaaaacacccct-aaaaaacaaactcctagacct 28937615  T
Q  239 caacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctct 305  Q
     |||| ||||| |||||||||| | ||||||||||  |||||| |||||||||||||||||| ||||    
T  28937616 gaacatcaaag-tgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 28937681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 304
Target Start/End: Original strand, 40023389 - 40023536
Alignment:
Q  156 cactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagc 255  Q
    ||||||||||||| ||||||  | || |||||||||||||||| | | || |||| ||||||||||| ||||||||||| |  |||||||  ||||||||    
T  40023389 cactgtaaacacggtatccacaaccatccatcgtcactactcatcccaaaagaacgcccctcaaaat-aaaactcccagactacaacaccctagctgagc 40023487  T
Q  256 cacattcgaaaagctcctagctgaaagatcattcagcttccaccacctc 304  Q
    ||||||||||||||||||| | ||| || ||| |||||||||| |||||    
T  40023488 cacattcgaaaagctcctaaccgaatgaacatgcagcttccacaacctc 40023536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 261
Target Start/End: Complemental strand, 43012677 - 43012536
Alignment:
Q  118 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 217  Q
    ||||||||  ||||||| ||||||||||||||||| |||| |||||||||| |||||| |  |  |||||| ||||||||||| |||| ||||| |||||    
T  43012677 acatcaccatctaaaacagactccttcacaaaaacaagcattgtaaacacggtatccacccccgtccatcgccactactcacctccaaagaaca-ccctc 43012579  T
Q  218 aaaattaaaactcccagtcctcaacaccaaagctgagccacatt 261  Q
     ||||||||||||| || || ||||||| |||||||||||||||    
T  43012578 -aaattaaaactcctagaccccaacacccaagctgagccacatt 43012536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 306
Target Start/End: Complemental strand, 7105232 - 7104956
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaac-----accctaaaagacacctctgaggacaacactcaccaaaatatacatcacc 125  Q
    |||||||||||| | || |||| ||||||||||||| |||||||||     ||||||||| ||||  | || ||||| || | |||||| ||   |||||    
T  7105232 tacaaactaaagacaccttataaaggcggaacacccaaaaataaacacccaaccctaaaaaacacgcccgaagacaa-acccgccaaaacat--gtcacc 7105136  T
Q  126 gcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaa 225  Q
     |||||||| |||| |||||  ||||| |||||| |||| ||  |||||| || ||||||||||||||||||||| | ||  ||||||||| |||| |||    
T  7105135 acctaaaacagacttcttcaagaaaacaagcactataaaaacagtatccaccaccacccatcgtcactactcaccccaaagaaacaccccttaaaa-taa 7105037  T
Q  226 aactcccagtcctcaaca-ccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||||||||||||  |||| | ||| |||||||| ||||||||||||| || | |||  ||||| ||||||||||||||||||    
T  7105036 aactcccagtccctaacatcaaaaactgagccatattcgaaaagctcataac-gaagcatcatacagcttccaccacctctc 7104956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 45 - 200
Target Start/End: Original strand, 48893060 - 48893214
Alignment:
Q  45 gccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttc 144  Q
    |||||||||| | |||||| ||||||||||||||  ||||| ||||| |||| |||||||| |||||||||| |  ||||| |||||||  ||||||||     
T  48893060 gccgtatataagaggaacatccgaaaataaacactttaaaa-acacccctgaagacaacacccaccaaaatacatgtcaccacctaaaagagactccttt 48893158  T
Q  145 acaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 200  Q
    ||||||||||  || ||||| || ||||||||  ||| || |||||||||||||||    
T  48893159 acaaaaacgattacggtaaaaacaatatccaatgtcatccgtcgtcactactcacc 48893214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 200
Target Start/End: Complemental strand, 14194317 - 14194154
Alignment:
Q  32 acaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaa 131  Q
    |||||| ||||| ||| ||||||||||||||| ||||||||||||| ||||||| ||||   ||||||| |||| |||||||||| || ||||| |||||    
T  14194317 acaaacaaaaggtgccttatataggcggaacatccgaaaataaacatcctaaaa-acactcatgaggaccacacccaccaaaatacacgtcaccacctaa 14194219  T
Q  132 aactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 200  Q
    ||| |||||| |||| ||| ||  ||||| ||  ||||||||||||  || ||||||||||||||||||    
T  14194218 aacagactccatcacgaaatcg-ccactg-aataacgatatccaac--catccatcgtcactactcacc 14194154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 306
Target Start/End: Complemental strand, 25648073 - 25647799
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||   ||||||| |||| |||||||  | |  ||||| |     
T  25648073 aatacaaacaaaaggcgcagtatatagacggaacacccgaaaataaacaccctaaaa-acacacatgaggaccacacccaccaaataacatgtcaccaca 25647975  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccacca---acgaacacccctcaaaattaa 225  Q
    ||||||  ||||| ||||  |||| | ||||| ||| ||||||||||||  || ||||| |||||||||||| |||   |  ||||||||| ||||  |     
T  25647974 taaaacatactccatcac-gaaaccaccactg-aaaaacgatatccaac--catccatcatcactactcacccccaaataaaaacacccctaaaaa--at 25647881  T
Q  226 aactccca-gtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||| ||||  |||| | ||||||| ||||||||| | |||||||||| || | ||||||||||||| ||| |||||||||||    
T  25647880 aacccccacttcctgagcaccaaaactgagccacgtccgaaaagctcataaccgaaagatcattcaactttcaccacctctc 25647799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 14280240 - 14280343
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||| || ||| | | | ||||||||||||| ||| |||||| || ||||| ||    
T  14280240 aatacaaattaaaggcgccgtatataggcggaacacccgaaagtaaacactctgaaa-atatc-ctgaggacaacacccactaaaatacacgtcaccacc 14280337  T
Q  129 taaaac 134  Q
    ||||||    
T  14280338 taaaac 14280343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 261
Target Start/End: Complemental strand, 53248200 - 53248061
Alignment:
Q  118 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 217  Q
    |||||||| |||||||| ||||||   | |||||| ||||||||||||||| || ||| || | |||||||||||||||||||  ||| ||||| | |||    
T  53248200 acatcaccacctaaaacagactcc---aaaaaaacaagcactgtaaacacggtaaccaccaccgcccatcgtcactactcacccacaaagaaca-ctctc 53248105  T
Q  218 aaaattaaaactcccagtcctcaacaccaaagctgagccacatt 261  Q
    ||||| ||||||| ||| || ||||||| || ||||||||||||    
T  53248104 aaaataaaaactctcagaccccaacacccaaactgagccacatt 53248061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 46358071 - 46358135
Alignment:
Q  27 aaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacc 91  Q
    |||||||||||||||| ||| ||||||||||| |||||| ||||||||||||| |||||||||||    
T  46358071 aaaatacaaactaaagacgctgtatataggcgaaacacctgaaaataaacaccttaaaagacacc 46358135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 47235971 - 47235826
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| ||||||||||||||| |||||| || |  ||||||||||||||||||  ||| ||||| ||||||||| |||||||| ||| || |||||||     
T  47235971 aaaaacaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctcaaaa-taaaactcgcagaccccaacaccc 47235874  T
Q  247 aagctgagccaca-ttcgaaaagctcctagctgaaagatcattcagct 293  Q
    ||||||| ||||| |||||| ||| |||| | ||| |||||| |||||    
T  47235873 aagctgaaccacatttcgaagagcacctaaccgaaggatcatgcagct 47235826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 14893318 - 14893264
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 85  Q
    ||||||| |||| |||||||||||||||||||||| |||||||||||||||||||    
T  14893318 tacaaacaaaagacgccgtatataggcggaacacctgaaaataaacaccctaaaa 14893264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 293
Target Start/End: Complemental strand, 20612054 - 20611911
Alignment:
Q  148 aaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaa 247  Q
    ||||| ||||||||||||||  |||||| |||| |||||||||||||||||||  ||| ||||| |||||| || ||||||||| || || ||||||| |    
T  20612054 aaaacaagcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaaca-ccctcagaa-taaaactcctagacc-caacaccca 20611958  T
Q  248 agctgagccaca-ttcgaaaagctcctagctgaaagatcattcagct 293  Q
    ||||||| |||| |||||| ||| |||| | ||| ||||||||||||    
T  20611957 agctgagtcacatttcgaagagcacctaaccgaaggatcattcagct 20611911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 1652569 - 1652628
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacc 91  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||||    
T  1652569 tacaaactaaaggcgtcgtatataggcggaacacccg-aaataaacacccacaaagacacc 1652628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 25594304 - 25594406
Alignment:
Q  94 tgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcact 193  Q
    |||||||||||| ||||| |||| |||||||  ||||||||  |||||||||| ||||||| ||||| ||| ||||||||||| | ||||||||| ||||    
T  25594304 tgaggacaacacccaccacaataaacatcactacctaaaacatactccttcac-aaaacgaccactgaaaaaacgatatccaa-accacccatcgccact 25594401  T
Q  194 actca 198  Q
    |||||    
T  25594402 actca 25594406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 306
Target Start/End: Original strand, 39021094 - 39021245
Alignment:
Q  156 cactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaa-cacccctcaaaattaaaactcccagtcctcaacaccaaagctgag 254  Q
    ||||||||| ||||||||| ||  | | ||||||||||||||||  |||| ||| ||| | ||||||| ||| ||| |||||||||||||||||||| ||    
T  39021094 cactgtaaaaacgatatcccacgcctctcatcgtcactactcacacccaaagaaacacgcgtcaaaatgaaa-ctctcagtcctcaacaccaaagctaag 39021192  T
Q  255 ccacattcgaaaagctcctagctg-aaagatcattcagcttccaccacctctc 306  Q
    |||||| |||||| ||| || | | |||||||| |||||| |||||| |||||    
T  39021193 ccacatccgaaaaactcatatccgaaaagatcaatcagctaccaccatctctc 39021245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 9583852 - 9583972
Alignment:
Q  136 gactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagt 235  Q
    |||||||||| |||||| ||||| |||||||||||||||| || | || ||||||||||||||||  ||| |||||  |||||||| ||||||||||||     
T  9583852 gactccttcaaaaaaacaagcaccgtaaacacgatatccaccaccgcctatcgtcactactcacc-gcaaagaaca-tcctcaaaa-taaaactcccaga 9583948  T
Q  236 cctcaacaccaaagctgagccaca 259  Q
    || ||| ||| |||| ||||||||    
T  9583949 ccccaaaacccaagcagagccaca 9583972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 261
Target Start/End: Complemental strand, 19176806 - 19176665
Alignment:
Q  118 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 217  Q
    |||| ||| |||||||| ||||||   | |||||| ||||| ||||||||  |||||| || || |||||||||||||||||| | || ||||| |||||    
T  19176806 acataaccacctaaaacagactccaaaaaaaaaacaagcacagtaaacacagtatccaccaccatccatcgtcactactcacccctaaagaaca-ccctc 19176708  T
Q  218 aaaattaaaactcccagtcctcaacaccaaagctgagccacatt 261  Q
    |||| |||||| ||||| || | ||||| |||||||||||||||    
T  19176707 aaaa-taaaacacccagaccccgacacccaagctgagccacatt 19176665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 33143643 - 33143812
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    ||||||| | ||||||| | ||||||||||||||||||||||| |||||||| |||| || ||   ||||| ||||  ||||| || | || ||||| ||    
T  33143643 aatacaaccaaaaggcgtcatatataggcggaacacccgaaaa-aaacaccc-aaaaaactcccaagaggataacatccaccataaaacacgtcaccacc 33143740  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 200  Q
    ||||||  |||||||||| ||||| | ||||| | | ||||||||||||  || || |||||||||||||||    
T  33143741 taaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaaccccatccgtcgtcactactcacc 33143812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 41039527 - 41039463
Alignment:
Q  49 tatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaa 114  Q
    ||||||||||||||||| ||||||||||||||||||| |||||  ||| |||||||| ||||||||    
T  41039527 tatataggcggaacaccagaaaataaacaccctaaaa-acacccgtgaagacaacacccaccaaaa 41039463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 2392321 - 2392426
Alignment:
Q  154 agcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctga 253  Q
    ||||||||||||||| |||||| || | |||||||||||||||||||  |||  ||||  |||  ||| ||||||||| || || ||||||| |||||||    
T  2392321 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataaca--cctacaaaataaaactcctagaccccaacacccaagctga 2392418  T
Q  254 gccacatt 261  Q
    ||||||||    
T  2392419 gccacatt 2392426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 2394085 - 2394190
Alignment:
Q  154 agcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctga 253  Q
    ||||||||||||||| |||||| || | |||||||||||||||||||  |||  ||||  |||  ||| ||||||||| || || ||||||| |||||||    
T  2394085 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataaca--cctacaaaataaaactcctagaccccaacacccaagctga 2394182  T
Q  254 gccacatt 261  Q
    ||||||||    
T  2394183 gccacatt 2394190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 12086615 - 12086483
Alignment:
Q  46 ccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttca 145  Q
    ||||||| ||||||||||  |||||||||||| | ||||||| ||| |  | ||| |||| |||||||||| |||||||| |||||||| ||    ||||    
T  12086615 ccgtataaaggcggaacattcgaaaataaacatcttaaaagataccccctaagaccacacccaccaaaataaacatcaccacctaaaacagatgtattca 12086516  T
Q  146 caaaaacgagcactgtaaacacgatatccaaca 178  Q
      ||||||| ||||||||| ||||||| |||||    
T  12086515 agaaaacgatcactgtaaaaacgatattcaaca 12086483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 30352249 - 30352359
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| || |||||||||||| |||||| || ||||||||||||||||||| |  ||| ||||| |||| |||   |||||||| || || |||||||     
T  30352249 aaaaacaagtactgtaaacacggtatccaccaccacccatcgtcactactcatccacaaagaaca-ccctaaaa---aaaactccgagaccccaacaccc 30352344  T
Q  247 aagctgagccacatt 261  Q
    |||||||||||||||    
T  30352345 aagctgagccacatt 30352359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 32010177 - 32010117
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagaca 89  Q
    ||||||| ||||| ||| ||||||||||||||| ||| ||||||||||||| |||||||||    
T  32010177 aatacaacctaaaagcgtcgtatataggcggaatacctgaaaataaacaccttaaaagaca 32010117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 14754974 - 14755016
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaa 71  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  14754974 aatacaaactaaaggcgccgtacataggcggaacaccctaaaa 14755016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 139
Target Start/End: Original strand, 1652648 - 1652691
Alignment:
Q  96 aggacaacactcaccaaaatatacatcaccgcctaaaactgact 139  Q
    |||||||||| |||||||||| |||||||| |||||||||||||    
T  1652648 aggacaacacccaccaaaataaacatcaccccctaaaactgact 1652691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 17551190 - 17551113
Alignment:
Q  182 cccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacatt 261  Q
    |||||||||||||||||||  ||| ||||| ||||||||| |||||||| ||| || ||||||| || ||||||||||||    
T  17551190 cccatcgtcactactcaccgacaaagaaca-ccctcaaaa-taaaactctcagaccccaacacccaaactgagccacatt 17551113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 34475564 - 34475631
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacaccc 214  Q
    |||||| |||| |||||||||| |||||| || | |||||||||||||||||||  ||| ||||||||    
T  34475564 aaaaacaagcaatgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccc 34475631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 14755166 - 14755232
Alignment:
Q  240 aacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||||||||||||||||||||| | | |||||| |  | ||||||||||||| ||||||||| |||||    
T  14755166 aacaccaaagctgagccacatccaacaagctcatccccgaaagatcattcaacttccaccatctctc 14755232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 25594217 - 25594255
Alignment:
Q  47 cgtatataggcggaacacccgaaaataaacaccctaaaa 85  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  25594217 cgtatataggcggaacacccgaaagtaaacaccataaaa 25594255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 304
Target Start/End: Original strand, 37998971 - 37999125
Alignment:
Q  148 aaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaa-cacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    ||||||| |||||| || ||||||||||||  ||| ||||||||| |||||| |  ||  || ||||| | |||||||||  |||| ||||| |||||||    
T  37998971 aaaacgaccactgttaaaacgatatccaac--cactcatcgtcaccactcacaaaaaaaaaaacacccattaaaattaaacttccc-gtcctaaacacca 37999067  T
Q  247 aagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctc 304  Q
    ||| ||| |||| | | ||||||||||| |  |||||||| | |||||||||||||||    
T  37999068 aagttgatccacctccaaaaagctcctatccaaaagatcaattagcttccaccacctc 37999125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 32010072 - 32010027
Alignment:
Q  109 ccaaaatatacatcaccgcctaaaactgactccttcacaaaaacga 154  Q
    |||||||| |||||||| |||||||| ||||||||||| |||||||    
T  32010072 ccaaaataaacatcaccacctaaaacagactccttcacgaaaacga 32010027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 293
Target Start/End: Complemental strand, 45164126 - 45163983
Alignment:
Q  149 aaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaa 248  Q
    |||| |||| |||||||||| ||| || || | ||||||||||||| |||||  |||  |||| ||||||||| ||||||||| || || ||||||| ||    
T  45164126 aaacaagcattgtaaacacggtattcatcaccgcccatcgtcactaatcacctacaaataaca-ccctcaaaa-taaaactcctagaccccaacacccaa 45164029  T
Q  249 gctgagccaca-ttcgaaaagctcctagctgaaagatcattcagct 293  Q
    ||| ||||||| |||||| ||| |||| | ||| |||||| |||||    
T  45164028 gctaagccacatttcgaagagcacctaaccgaaggatcatgcagct 45163983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 27399270 - 27399218
Alignment:
Q  94 tgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcac 146  Q
    |||||||||||| |||||||||| |||||| | |||||||| | |||||||||    
T  27399270 tgaggacaacacccaccaaaataaacatcatcacctaaaacaggctccttcac 27399218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 37998900 - 37998956
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 85  Q
    ||||||||| ||| | |||||||||||||||||   ||||||||||||||| |||||    
T  37998900 aatacaaacaaaatgtgccgtatataggcggaatgtccgaaaataaacaccttaaaa 37998956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 29 - 306
Target Start/End: Original strand, 20701488 - 20701771
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaa-----atatacatca 123  Q
    ||||||||| |||||||| |||||||||||||||||| | |||||||||| ||||||  ||||   ||||||||||| || ||||     | | || |||    
T  20701488 aatacaaacaaaaggcgctgtatataggcggaacacctggaaataaacacactaaaa--cacccacgaggacaacacccatcaaaccctaaaacacttca 20701585  T
Q  124 ccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaa----cacccctcaa 219  Q
    || |||| ||| ||| | ||||| ||| | | ||||||||| ||||||||||| |  |||||||||||||||||||| ||||  ||    ||||| | ||    
T  20701586 ccacctataacagacccattcacgaaagcaaccactgtaaaaacgatatccaatactacccatcgtcactactcacccccaaaaaaaaaacaccctttaa 20701685  T
Q  220 aattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacctctc 306  Q
    ||  ||| |||| |||| | |||| ||||| |||||||||||||||||||||||| | ||||||||||||||||||||| |||||||    
T  20701686 aaacaaa-ctcctagtcttgaacaacaaagttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactacctctc 20701771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 29 - 306
Target Start/End: Original strand, 15120293 - 15120565
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 128  Q
    |||||||||||||| || ||||| ||||| ||||| | || |||||||||||||||| ||| |  |||||||||||  |||||||||| |||||||| ||    
T  15120293 aatacaaactaaagacgacgtatgtaggcagaacatctgacaataaacaccctaaaaaacatccatgaggacaacatccaccaaaatacacatcaccacc 15120392  T
Q  129 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaac 228  Q
    |||||| ||||| ||||||||||  |  ||| |    || |||||||||| || ||||||||||||||||||  |||  |||| |||| |||||| ||||    
T  15120393 taaaacagactcattcacaaaaa-aacgacttt----acaatatccaacaccatccatcgtcactactcaccctcaagaaacatccctaaaaatt-aaac 15120486  T
Q  229 tcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagct-gaaagatcattcagcttccaccacctctc 306  Q
     | ||||||||||||||||||   |||||| | |||||| ||  || ||  ||||||||  ||||||||||||||||||    
T  15120487 ccgcagtcctcaacaccaaagtaaagccacgtccgaaaatctaatatctaaaaagatcaaccagcttccaccacctctc 15120565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 302
Target Start/End: Original strand, 3880404 - 3880562
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaa----cacccctcaaaattaaaactcccagtcctcaac 242  Q
    |||||||| |||| |||| ||||||||||||| || |  ||||||||||||||| || | |||    ||||||||||||||||| |||| |||| | |||    
T  3880404 aaaaacgaccactataaaaacgatatccaacaccatctgtcgtcactactcaccccctaagaaaaaacacccctcaaaattaaa-ctccaagtcttgaac 3880502  T
Q  243 accaaagctgagccacattcgaaaagctcctagctgaaagatcattcagcttccaccacc 302  Q
    |||||||||||||||||| | |||||||| || | ||||||| ||||| |||||||||||    
T  3880503 accaaagctgagccacatccaaaaagctcatatccgaaagattattcaacttccaccacc 3880562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 17278153 - 17278215
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacc 91  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  17278153 aatacaatctaaaggcgtcgtatataggcggaacacccgaaaataaacatcataaaagacacc 17278215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 268
Target Start/End: Complemental strand, 13423716 - 13423603
Alignment:
Q  159 tgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaa-cacccctca---aaattaaaactcccagtcctcaacaccaaagctgag 254  Q
    |||||| |||| |||| ||| |||||||| |||||||||||| |||| ||| |||||||||   ||| | ||||||  ||||||||||||||||||||||    
T  13423716 tgtaaaaacgacatcccacaacacccatcttcactactcacccccaatgaaacacccctcagtcaaaattaaactctaagtcctcaacaccaaagctgag 13423617  T
Q  255 ccacattcgaaaag 268  Q
    |||||| |||||||    
T  13423616 ccacatccgaaaag 13423603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 6860423 - 6860348
Alignment:
Q  29 aatacaaactaaaggcgccgtatatagg--cggaacacccgaaaataaacaccctaaaagacacctctgaggacaac 103  Q
    ||||||||| |||| |||||||||||||  |||||||||| |||||||||||||||||| |||||| || |||||||    
T  6860423 aatacaaacaaaagacgccgtatataggggcggaacacccaaaaataaacaccctaaaa-acacctatgcggacaac 6860348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 304
Target Start/End: Original strand, 32935099 - 32935305
Alignment:
Q  95 gaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcacta 194  Q
    ||||||||||| |||||||||| ||| |||| |||||||  |||||||| || ||||||  | ||  ||| ||||||| ||  | |||||||| ||||||    
T  32935099 gaggacaacacccaccaaaataaacaccaccacctaaaatagactccttaacgaaaacgccccctcaaaa-acgatatacataaccacccatcatcacta 32935197  T
Q  195 ctcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctgaaagatcattcagctt 294  Q
    || ||| ||||  |||| ||||| |||| ||| ||| |||| |||| |||||||||||||  |||| |||||| ||| |    |||||||||| ||||||    
T  32935198 ctgacc-ccaaaaaacatccctctaaatgaaa-ctcacagtgctcatcaccaaagctgagttacatccgaaaaactcatgttcgaaagatcatgcagctt 32935295  T
Q  295 ccaccacctc 304  Q
    ||||||||||    
T  32935296 ccaccacctc 32935305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 10542105 - 10541993
Alignment:
Q  147 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 246  Q
    |||||| |||||| |||| ||| |||||| || | |||||||||||||||||||  ||| ||| ||||  ||||  ||||||| |||| || |||||||     
T  10542105 aaaaacaagcactttaaatacggtatccaccaccgcccatcgtcactactcacccacaaagaataccctccaaa--taaaacttccagaccccaacaccc 10542008  T
Q  247 aagctgagccacatt 261  Q
    |||||||||||||||    
T  10542007 aagctgagccacatt 10541993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 261
Target Start/End: Complemental strand, 14663343 - 14663238
Alignment:
Q  154 agcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagctga 253  Q
    |||||||||||||| ||||||| || | |||||||||||||||||||  ||| |||||  |||||||| |||||||||||  || ||||| | |||| ||    
T  14663343 agcactgtaaacacaatatccaccaccgcccatcgtcactactcacccgcaaagaaca-tcctcaaaa-taaaactcccaaaccccaacatccaagccga 14663246  T
Q  254 gccacatt 261  Q
    ||||||||    
T  14663245 gccacatt 14663238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 26215711 - 26215826
Alignment:
Q  27 aaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccg 126  Q
    |||||||||| ||||||| | ||||||| ||||| |||| ||||| |||||||   ||||| ||| | | || |||||| |||||||||| ||| ||||     
T  26215711 aaaatacaaattaaaggcactgtatatatgcggaccacctgaaaacaaacaccaataaagataccccagcggtcaacacccaccaaaataaacaacaccc 26215810  T
Q  127 cctaaaactgactcct 142  Q
    ||||||||||| ||||    
T  26215811 cctaaaactgattcct 26215826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 3880301 - 3880359
Alignment:
Q  27 aaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 85  Q
    ||||||||||| |||||  ||||||||| ||||||||||  ||||||||||||||||||    
T  3880301 aaaatacaaacaaaaggttccgtatataagcggaacaccaaaaaataaacaccctaaaa 3880359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 12794505 - 12794465
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaa 71  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  12794505 tacaaactaaaggcgccgtatatagacggaacatccgaaaa 12794465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 20500323 - 20500282
Alignment:
Q  48 gtatataggcggaacacccgaaaataaacaccctaaaagacac 90  Q
    ||||||||||||||||||| |||||||||||| ||||||||||    
T  20500323 gtatataggcggaacaccc-aaaataaacaccataaaagacac 20500282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 26534424 - 26534464
Alignment:
Q  31 tacaaactaaaggcgccgtatataggcggaacacccgaaaa 71  Q
    ||||||| ||||||| ||||||||||||||||||| |||||    
T  26534424 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 26534464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 205
Target Start/End: Original strand, 1347 - 1522
Alignment:
Q  34 aaactaaaggcgccgtatataggcggaacacccgaaaa-taaacaccctaaaagacacctctgaggacaaca---ctcaccaaaatatacatcaccgcct 129  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||| || |||||||||   | ||| |||||| || ||||| |||    
T  1347 aaacaaaaggcgccgtatataggcagaacacccgaaaaataaacaccataaaaaacacccctaaggacaacaaaacccacaaaaatacacgtcaccacct 1446  T
Q  130 aaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaa 205  Q
    ||||||||||||| ||| | ||| | ||||||||| ||||||||||||| ||| | ||||||||||| ||| ||||    
T  1447 aaaactgactcctacacgagaacaaccactgtaaaaacgatatccaacaccacacgtcgtcactactgacccccaa 1522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 306
Target Start/End: Complemental strand, 19687 - 19496
Alignment:
Q  111 aaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaac 210  Q
    |||||| |||||||| ||||||||  |||||||| ||||||||| | || |||| ||||||||||||  ||| |||||||||||||| || ||||  ||     
T  19687 aaaatacacatcaccacctaaaacaaactccttctcaaaaacgacctctataaaaacgatatccaac--cacacatcgtcactactcgcc-ccaagaaat 19591  T
Q  211 acccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctg-aaagatcattcagcttccaccacctctc 306  Q
    |||| |||||| ||||  ||  | |||||||||||||||| ||||||||||||||||||||||  | | |||||| ||||||||||||||| |||||    
T  19590 acccttcaaaaataaacttc--aatcctcaacaccaaagcagagccacattcgaaaagctcctgtccgaaaagattattcagcttccaccaactctc 19496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 306
Target Start/End: Original strand, 41915 - 42106
Alignment:
Q  111 aaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaac 210  Q
    |||||| |||||||| ||||||||  | |||||| |  |||||| | || |||| ||||||||||||  |||||||||||||||||| || ||||  ||     
T  41915 aaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatccaac--cacccatcgtcactactcgcc-ccaagaaat 42011  T
Q  211 acccctcaaaattaaaactcccagtcctcaacaccaaagctgagccacattcgaaaagctcctagctg-aaagatcattcagcttccaccacctctc 306  Q
    |||| | |||| ||||  ||  | |||||||||||||||| ||||||||||||||||||||||| | | |||||| ||||||||||||||| |||||    
T  42012 accctttaaaaataaacttc--aatcctcaacaccaaagcagagccacattcgaaaagctcctatccgaaaagattattcagcttccaccaactctc 42106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 686 - 746
Alignment:
Q  29 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagaca 89  Q
    |||||||||||||| || |||||||| | |||||||||||||||||||||| |||||||||    
T  686 aatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaagaca 746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 790 - 916
Alignment:
Q  94 tgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcact 193  Q
    |||||||||||  |||||||||| |||||||| |||||||| ||||| |||||   || || ||||| ||| ||||||||||  | ||| ||||||||||    
T  790 tgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttcac-ggaatgatcactggaaa-acgatatccataaccactcatcgtcact 887  T
Q  194 actcaccaccaacg-aacacccctcaaaat 222  Q
    ||||| | |||||| |||||||||| ||||    
T  888 actcatc-ccaacgtaacacccctctaaat 916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 5985 - 5867
Alignment:
Q  141 cttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctca 240  Q
    ||||| |||||| ||||| ||||||| | |||||| || | |||||| ||||||||||||  |||  |||| ||||||||| ||||||||||||  | ||    
T  5985 cttcaaaaaaacaagcaccgtaaacatggtatccaccacctcccatcatcactactcacccacaaaaaaca-ccctcaaaa-taaaactcccagatccca 5888  T
Q  241 acaccaaagctgagccacatt 261  Q
    ||||| |||||||||||||||    
T  5887 acacccaagctgagccacatt 5867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University