View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15624_high_24 (Length: 301)
Name: NF15624_high_24
Description: NF15624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15624_high_24 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 54 - 301
Target Start/End: Original strand, 49665555 - 49665802
Alignment:
| Q |
54 |
cacagtggtagtgatacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactc |
153 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49665555 |
cacagtggcagtactacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactc |
49665654 |
T |
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| Q |
154 |
ctcctcccacctatcactttgtttcttttcgtatcgttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgca |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49665655 |
ctcctcccacctatcactttgtttcttttcgtatcgttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgca |
49665754 |
T |
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| Q |
254 |
taactatacgtgtccgcattatgatctctactaccagcctcatagcca |
301 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49665755 |
taactatacgtgtccgcactatgatctctactaccagcctcatagcca |
49665802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 54 - 301
Target Start/End: Original strand, 49709112 - 49709359
Alignment:
| Q |
54 |
cacagtggtagtgatacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactc |
153 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49709112 |
cacagtggcagtactacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactc |
49709211 |
T |
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| Q |
154 |
ctcctcccacctatcactttgtttcttttcgtatcgttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgca |
253 |
Q |
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| T |
49709212 |
ctcctcccacctatcactttgtttcttttcgtatcgttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgca |
49709311 |
T |
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| Q |
254 |
taactatacgtgtccgcattatgatctctactaccagcctcatagcca |
301 |
Q |
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| T |
49709312 |
taactatacgtgtccgcactatgatctctactaccagcctcatagcca |
49709359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 54 - 262
Target Start/End: Original strand, 49210252 - 49210458
Alignment:
| Q |
54 |
cacagtggtagtgatacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactc |
153 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49210252 |
cacagtggtagtaatacttctacttgtgtttttagagacattaatctctacaaaatgctgcaaaacaaaagttgtgaagctttcagatatagttatactc |
49210351 |
T |
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| Q |
154 |
ctcctcccacctatcactttgtttcttttcgtatcg-ttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgc |
252 |
Q |
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||||||||||| ||||||||||||||||| || | ||| | | ||| ||||| |||||||| ||| |||||| ||||||||||||||||||||| |
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| T |
49210352 |
ttcctcccacctctcactttgtttcttttcaaatggaaactc-atataaccttgttc--gtgcaaccttactctccatgtcaaccctccaacatatatgc |
49210448 |
T |
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| Q |
253 |
ataactatac |
262 |
Q |
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|||| ||||| |
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| T |
49210449 |
ataattatac |
49210458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 49864575 - 49864522
Alignment:
| Q |
195 |
tacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatat |
248 |
Q |
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| T |
49864575 |
tacacaaccttgttcatgtgcaaccgtaccctccatgtcagccctccaacatat |
49864522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 41686396 - 41686248
Alignment:
| Q |
35 |
tgtaactcctcttgattttcacagtggtagtgatacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagct |
134 |
Q |
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||||| ||||| ||| | ||||||||||| || |||| ||| ||||||||| |||||||||||||||||||||||| | || || || ||||||| || |
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| T |
41686396 |
tgtaagtcctcctgagtatcacagtggtaatgctactcctaattgtgtttttagagacaataatctctacaaactgttttaatccagaaattgtgaaact |
41686297 |
T |
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| Q |
135 |
ttcagatataattatactcctcctcccacctatcactttgtttcttttc |
183 |
Q |
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| T |
41686296 |
ttcagatataactatactcttccccccacctctcactttgtttcttttc |
41686248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 41686244 - 41686187
Alignment:
| Q |
205 |
tgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgcataactatac |
262 |
Q |
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||||||||||||||||||| ||||||||||| | |||||||||||||||||| ||||| |
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| T |
41686244 |
tgttcatgtgcaaccgtactctccatatcaaacgtccaacatatatgcataattatac |
41686187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 18317611 - 18317668
Alignment:
| Q |
205 |
tgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgcataactatac |
262 |
Q |
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| T |
18317611 |
tgttcatgtgcaacagtactctccatatcaaacttccaacatatatgcataattatac |
18317668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 18317550 - 18317607
Alignment:
| Q |
125 |
ttgtgaagctttcagatataattatactcctcctcccacctatcactttgtttcttttc |
183 |
Q |
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| T |
18317550 |
ttgtgaagctttcaaatataactatactcttcc-cccacctctcactttgtttcttttc |
18317607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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