View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15624_high_8 (Length: 366)
Name: NF15624_high_8
Description: NF15624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15624_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 42203343 - 42202994
Alignment:
| Q |
1 |
gaacaatgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttataggatctttcattagttcaagagatataggacatcgaaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42203343 |
gaacaatgtttcgcacaaaaaggattgtggataatacctgaccggtggagacaattataggatctttcattagttcaagagatataggacatcgaaaatc |
42203244 |
T |
|
| Q |
101 |
gactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgcagtctttcagtttcctaagaaggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42203243 |
gactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgcagtctttcagtttcctaagaaggg |
42203144 |
T |
|
| Q |
201 |
atgagacggtttcaaaattgtcttctactcttctagttctccgttgcctattatgaccaattcgtgtaattcttagtcctcagatgcagcttctcagatg |
300 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42203143 |
atgagacggtttcaaaactg--------tcttctagttctccgttgcctattatgaccaattcgtgtaattcttagtcctcagatgcagcttctcagatg |
42203052 |
T |
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| Q |
301 |
caacttctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42203051 |
caacttctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
42202994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 42212211 - 42211862
Alignment:
| Q |
1 |
gaacaatgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttataggatctttcattagttcaagagatataggacatcgaaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212211 |
gaacaatgtttcgcacaaaaaggattgtggataatacctgaccggtggagacaattataggatctttcattagttcaagagatataggacatcgaaaatc |
42212112 |
T |
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| Q |
101 |
gactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgcagtctttcagtttcctaagaaggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212111 |
gactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgcagtctttcagtttcctaagaaggg |
42212012 |
T |
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| Q |
201 |
atgagacggtttcaaaattgtcttctactcttctagttctccgttgcctattatgaccaattcgtgtaattcttagtcctcagatgcagcttctcagatg |
300 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212011 |
atgagacggtttcaaaactg--------tcttctagttctccgttgcctattatgaccaattcgtgtaattcttagtcctcagatgcagcttctcagatg |
42211920 |
T |
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| Q |
301 |
caacttctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42211919 |
caacttctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
42211862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 42421036 - 42421306
Alignment:
| Q |
1 |
gaacaatgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttataggatctttcattagttcaagagatataggacatcgaaaatc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||| ||| ||||| ||| ||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
42421036 |
gaacattgtttcgcacaaaaaggattgtcgataatacctgaccggttgagacgattacagggtctttcattagttcaagagatataggacaccgaaaatc |
42421135 |
T |
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| Q |
101 |
----------------gactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgcagtctttc |
184 |
Q |
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||| |||||||||||| ||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42421136 |
atctgggattacaggagaccggtgcttaattggaac-attctcact--------gtcataggtatcaacctcaggattttctgcgagcacgcagtctttc |
42421226 |
T |
|
| Q |
185 |
agtttcctaagaagggatgagacggtttcaaaattgtcttctactcttctagttctccgttgcctattatgaccaattcgtgtaattc |
272 |
Q |
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|||||||||||||| |||||||||||||||||| || ||| ||||||||||||||| | ||||||||||||| |||||||| |
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| T |
42421227 |
agtttcctaagaagagatgagacggtttcaaaactg--------tctcctagttctccgttgcttgttatgaccaattcatgtaattc |
42421306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 42218192 - 42217915
Alignment:
| Q |
1 |
gaacaatgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttataggatctttcattagttcaagagatataggacatcgaaaatc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||| |||||||| | ||| ||||||||||||||||||||||||||| |
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| T |
42218192 |
gaacaatgtttcacacaaaaaggattgtggataatacctgaccggttgagacaattacaggatcttcccttaattcaagagatataggacatcgaaaatc |
42218093 |
T |
|
| Q |
101 |
----------------gactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgcagtctttc |
184 |
Q |
| |
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||| ||||||||||||||| |||| ||| || ||||||||||||||| ||||||||||| ||||| ||||| |||| |
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| T |
42218092 |
ctctgggattacacgagaccagtgcttaattgaaac-attcgcgccct--------cataggtatcaaccttaggattttctgcgagcatgcagtttttc |
42218002 |
T |
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| Q |
185 |
agtttcctaagaagggatgagacggtttcaaaattgtcttctactcttctagttctccgttgcctattatgaccaattcgtgtaattc |
272 |
Q |
| |
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|||||||||||||||||||||| |||||||| || || ||| ||||||||||||| | | |||||||||||||||||||||| |
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| T |
42218001 |
agtttcctaagaagggatgagatggtttcaactttcaaaact-gtctcctagttctccgttactttttatgaccaattcgtgtaattc |
42217915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 293 - 358
Target Start/End: Original strand, 42421338 - 42421403
Alignment:
| Q |
293 |
ctcagatgcaacttctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
358 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| |
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| T |
42421338 |
ctcagatgcaacttctcagagagtcttttgagtatagcaggatcagggtctttatctttctgtgct |
42421403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 42217878 - 42217818
Alignment:
| Q |
298 |
atgcaacttctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
358 |
Q |
| |
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|||||||||||||| | | |||||||| ||| |||||||||||||||||||| |||||||| |
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| T |
42217878 |
atgcaacttctcagtgggtcttttgaggatagcaggatcagggtctttatctttctgtgct |
42217818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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