View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15626_high_1 (Length: 442)
Name: NF15626_high_1
Description: NF15626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15626_high_1 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold1297 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 8317094 - 8317541
Alignment:
| Q |
1 |
tgtttgacccttaatttaccacttcttagaaagtttgatatcaaaaactgcaattggtcgggtggaaaagatcttattttagaagctcctctacttgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8317094 |
tgtttgacccttaatttaccacttcttagaaagtttgatatcaaaaactgcaattggtcgggtggaaaagatcttattgtagaagctcctctacttgaaa |
8317193 |
T |
|
| Q |
101 |
ttgtttccatagaacaagacattgaattttattatgcggcatcccatgacctacatagccaatccatcaaattcaatgctttgcatctcaagcaattcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8317194 |
ttgtttccatagaacaagacattgaattttataatgcggcatcccatgacctacatagccaatccatcaaattcaatgctttgcatctcaagcaattcac |
8317293 |
T |
|
| Q |
201 |
ttactctgggtatggtacagcacaactaattcatttgttcgatcatggtttcctgtcttttgattcagctgaaatcatttgtaagccaagttttcctgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8317294 |
ttactctgggtatggtacagcacaactaattcatttgttcgatcatggtttcctgtcttttgattcagctgaaatcatttgtaagccaagttttcctgaa |
8317393 |
T |
|
| Q |
301 |
acagaacgcattccttttctcgttcaccttttaaagcaatttcaccacgtgaaatctatcaaaattgaggggttggacttgaatattgaggtaagcatgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8317394 |
acagaacgcattccttttctcgttcaccttttaaagcaatttcatcgcgtgaaatctatcaaaattgaggggttggacttgaatattgaggtaagcatgc |
8317493 |
T |
|
| Q |
401 |
gcgcgcg------cgcgtgtgtgttgtttaaccttttttgacactgaa |
442 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
8317494 |
gcgcgcgtgtgtttgtgtgtgtgttgtttaaccttttttgacactgaa |
8317541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 8359072 - 8358987
Alignment:
| Q |
35 |
ttgatatcaaaaactgcaattggtcgggtggaaaagatcttattttagaagctcctctacttgaaattgtttccatagaacaagac |
120 |
Q |
| |
|
||||||| |||||||||| ||||| ||| ||||||||||||| || |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
8359072 |
ttgatattaaaaactgcatttggtgtggtagaaaagatcttatcgtacaagctcctcttcttgaaaacatttccatagaacaagac |
8358987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 1857 - 1745
Alignment:
| Q |
9 |
ccttaatttaccacttcttagaaagtttgatatcaaaaactgcaattggtcgggtggaaaagatcttattttagaagctcctctacttgaaattgtttcc |
108 |
Q |
| |
|
|||||||||||| ||| | | ||||||||| |||| |||||| ||| |||| ||||||| || ||||| || |||| | |||||||||| ||||||| |
|
|
| T |
1857 |
ccttaatttaccgcttgtaaaaaagtttgagatcagtaactgccattagtcgaatggaaaatatgttattgtacaagcctccctacttgaaactgtttcc |
1758 |
T |
|
| Q |
109 |
atagaacaagaca |
121 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
1757 |
ataggacaagaca |
1745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 7795571 - 7795631
Alignment:
| Q |
32 |
agtttgatatcaaaaactgcaattggtcgggtggaaaagatcttattttagaagctcctct |
92 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||||||| ||| ||||| |||||||| |||| |
|
|
| T |
7795571 |
agtttgagatcaagaactgcaattggtcaagtggaaaggatgttattgtagaagcttctct |
7795631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University