View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15626_high_11 (Length: 302)
Name: NF15626_high_11
Description: NF15626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15626_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 12815272 - 12814984
Alignment:
| Q |
1 |
ggcaagtcttcggataatcctcaaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttggacttacttggtgatt |
100 |
Q |
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| T |
12815272 |
ggcaagtcttcggataatcctcaaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttggacttacttggtgatt |
12815173 |
T |
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| Q |
101 |
ctccagaaaacaagagaaaaaagactggttcatcgcattctgacaaagacagcagcagtgctcgcaagaaatcaggccatgcttctgtcggaagctaccc |
200 |
Q |
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| T |
12815172 |
ctccagaaaacaagagaaaaaagactggttcatcgcattctgacaaagacagcagcagtgctcgcaagaaatcaggccatgcttctgtcggaagctaccc |
12815073 |
T |
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| Q |
201 |
tgtggcagccggagtttcacagtgaatagtctttgactttagacatttggctgtgtacttggttttttggggtgaaaatacctttatct |
289 |
Q |
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| T |
12815072 |
tgtggcagccggagtttcacagtgaatagtctttgactttaggcatttggctgtgtacttggttttttggggtgaaaatacctttatct |
12814984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 12752312 - 12752022
Alignment:
| Q |
1 |
ggcaagtcttcggataatcctcaaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttggacttacttggtgatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12752312 |
ggcaagtcttcggataatcctcaaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttggacttacttggcgatt |
12752213 |
T |
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| Q |
101 |
ctccagaaaacaagagaaaaaagactggttcatcgcattctgacaaagacagcagcagtgctcgcaagaaatcaggccatgcttctgtcggaagctaccc |
200 |
Q |
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| T |
12752212 |
ctccagaaaacaagagaaaaaagactggttcatcgcattctgacaaagacagcagcagtgctcgcaagaaatcaggccatgcttctgtcggaagctaccc |
12752113 |
T |
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| Q |
201 |
tgtggcagccggagtttcacagtga--atagtctttgactttagacatttggctgtgtacttggttttttggggtgaaaatacctttatct |
289 |
Q |
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| T |
12752112 |
tgtggcagccggagtttcacagtgaatatagtctttgactttaggcatttggctgtgtacttggttttttggggtgaaaatacctttatct |
12752022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 7779318 - 7779469
Alignment:
| Q |
23 |
aaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttggacttacttggtgattctccag-aaaacaagagaaaaa |
121 |
Q |
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||||||||||||||| || | | ||| |||||||| | |||||||||||| |||||||||| || || |||||||||| |||| |||| |||||||||| |
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| T |
7779318 |
aaaataaagctgccattgcgtgtattaagaatatgcatagttcaaggagagatgcatttttgaacataattggtgattc-ccagaaaaataagagaaaaa |
7779416 |
T |
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| Q |
122 |
agactggttcatcgcattctgacaaagacagcagcagtgctcgcaagaaatca |
174 |
Q |
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||| | ||||||||| |||||||||| | ||| |||||||| |||||||||| |
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| T |
7779417 |
agatcgattcatcgcagtctgacaaaggccgcaacagtgctcccaagaaatca |
7779469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 7774503 - 7774658
Alignment:
| Q |
16 |
aatcctcaaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttggacttacttggtgattctccagaaaacaaga |
115 |
Q |
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||||||||||||||||||| || |||||| ||| ||||||| ||||||||| |||||| ||||||||||||| | |||| || ||||||||||||| |
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| T |
7774503 |
aatcctcaaaataaagctgacattgcatatcttaagaatatgaatggttcaagaagaggtcgatttttggacttaatcggtgcatccccagaaaacaaga |
7774602 |
T |
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| Q |
116 |
gaaaaaagactggttcatcgcattctgacaaagacagcagcagtgctcgcaagaaatca |
174 |
Q |
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| T |
7774603 |
g---aaagatggattcgtcgcagtctgacaaaggcagcgacagtgctcccaagaaatca |
7774658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 7768302 - 7768370
Alignment:
| Q |
16 |
aatcctcaaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttg |
84 |
Q |
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|||||| ||||||||||||||| | ||||| | |||||||| |||||||||||||| |||||||||| |
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| T |
7768302 |
aatcctgaaaataaagctgccatttcttatgtgaagaatatgcatggttcaaggagagatgcatttttg |
7768370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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