View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15626_high_9 (Length: 316)
Name: NF15626_high_9
Description: NF15626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15626_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 25933534 - 25933413
Alignment:
| Q |
1 |
caaccctcaacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaaccaagtgatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25933534 |
caaccctcaacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaaccaagtgatcaa |
25933435 |
T |
|
| Q |
101 |
ccttttcaggattacctgcttg |
122 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
25933434 |
ccttttcagaattacctgcttg |
25933413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 26101053 - 26100932
Alignment:
| Q |
1 |
caaccctcaacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaaccaagtgatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
26101053 |
caaccctcaacaacagagtcaaaggaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaagcaagtggtcaa |
26100954 |
T |
|
| Q |
101 |
ccttttcaggattacctgcttg |
122 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
26100953 |
cctttttaggattacctgcttg |
26100932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 182 - 310
Target Start/End: Complemental strand, 25933329 - 25933201
Alignment:
| Q |
182 |
aaggaaaaagaagtactgacttggatgacgaacagtggctctgacagtgtaaccacgttgaagtagaaacttaacaatccatgaagcaataaaaccatta |
281 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25933329 |
aaggagaaagaagcactgacttgggtgacgaacagttgctctgacagtgtaaccacattgaaggagaaacttaacaatccatgaagcaataaaaccatta |
25933230 |
T |
|
| Q |
282 |
gcacctgtcacacacaccacctttgcttc |
310 |
Q |
| |
|
|||||||||||||||||||| ||| |||| |
|
|
| T |
25933229 |
gcacctgtcacacacaccacttttccttc |
25933201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 169 - 310
Target Start/End: Complemental strand, 26100849 - 26100708
Alignment:
| Q |
169 |
gagaaagaatttgaaggaaaaagaagtactgacttggatgacgaacagtggctctgacagtgtaaccacgttgaagtagaaacttaacaatccatgaagc |
268 |
Q |
| |
|
||||||||| |||||||||||| | | || |||||| | ||| |||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
26100849 |
gagaaagaagttgaaggaaaaacatgcacatacttgggtcacggacagtggctcggacagtgtaaccacgttggagtaggaacttgacaatccatgaagc |
26100750 |
T |
|
| Q |
269 |
aataaaaccattagcacctgtcacacacaccacctttgcttc |
310 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
26100749 |
tataaaaccagaagcacctgtcacacacaccacctttccttc |
26100708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 29549050 - 29548958
Alignment:
| Q |
12 |
aacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaaccaagtgatcaacctt |
104 |
Q |
| |
|
|||||| ||||| ||||||||||| | | |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29549050 |
aacagaatcaaaggaaccttcttcaagtaaatctgccttaaagagttgcaacctttcctttgcaccatcaagtttaagcaagtgatcaacctt |
29548958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 195 - 310
Target Start/End: Complemental strand, 29555019 - 29554904
Alignment:
| Q |
195 |
tactgacttggatgacgaacagtggctctgacagtgtaaccacgttgaagtagaaacttaacaatccatgaagcaataaaaccattagcacctgtcacac |
294 |
Q |
| |
|
|||| |||||||| ||||||||||||||| |||||||||||||||||||| ||||| || |||| ||||||||||||| |||| |||||| || |||| |
|
|
| T |
29555019 |
tactaacttggatcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacctgaagcaccagttacac |
29554920 |
T |
|
| Q |
295 |
acaccacctttgcttc |
310 |
Q |
| |
|
| ||||||||| |||| |
|
|
| T |
29554919 |
aaaccacctttccttc |
29554904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 29548865 - 29548743
Alignment:
| Q |
182 |
aaggaaaaagaagtactgacttggatgacgaacagtggctctgacagtgtaaccacgttgaagtagaaacttaacaatccatgaagcaataaaaccatta |
281 |
Q |
| |
|
||||| ||||||| ||||||| || | ||||||||||||||| ||||| ||||||||||| || |||||||| |||| |||||||||||| ||||| | |
|
|
| T |
29548865 |
aaggagaaagaagcactgactagggtcacgaacagtggctctaacagtataaccacgttggagaagaaacttgacaacccatgaagcaatgaaacctgaa |
29548766 |
T |
|
| Q |
282 |
gcacctgtcacacacaccacctt |
304 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
29548765 |
gcacctgttacacacacaacctt |
29548743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 29555253 - 29555154
Alignment:
| Q |
18 |
gtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaaccaagtgatcaaccttttcaggattacct |
117 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||| ||||| |||||||| ||||| |||||||||||||||| || || |||||||| | |||||||||| |
|
|
| T |
29555253 |
gtcaaatgaaccttcttctaatagatctgccttgaagaggtgcaacctttccttagcaccatcaagtttaagtaaatggtcaaccttattaggattacct |
29555154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 29559194 - 29559120
Alignment:
| Q |
236 |
acgttgaagtagaaacttaacaatccatgaagcaataaaaccattagcacctgtcacacacaccacctttgcttc |
310 |
Q |
| |
|
|||||| || ||||||||||||| ||||||||||||| |||| | ||||||| |||||||| |||||| |||| |
|
|
| T |
29559194 |
acgttggagaagaaacttaacaagccatgaagcaatataacctgaaccacctgttacacacacaacctttccttc |
29559120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 87900 - 87805
Alignment:
| Q |
9 |
aacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccatcaagtttaaccaagtgatcaacctt |
104 |
Q |
| |
|
||||||||| ||||| | ||||||||| | |||| |||||| || |||||||| |||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
87900 |
aacaacagaatcaaaggcaccttcttcaagtagatttgccttgaacagttgcaatctctccttagcaccatcaagcttaaccaagtggtcaacctt |
87805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University