View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15626_low_1 (Length: 257)
Name: NF15626_low_1
Description: NF15626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15626_low_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 30963776 - 30963537
Alignment:
| Q |
18 |
attgtaatgctccgcaaccattccctcattcctaaaacaccactctttctatcttccaatccttcattctcaatcccctttcctcgctataacaattctc |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30963776 |
attgtaatgctccgcaaccattccctcattcctcaaacaccactctttctatcttccaatccttcattctcaatcccctttcctcgctataacaattctc |
30963677 |
T |
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| Q |
118 |
ttatcctttctaccaatacacaatctctctctttcacacttcaatccaaattatccatggctcaaggtattctatttcaaatctcgcttcttctaatctt |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30963676 |
ttatcctttctaccaatacccaatctctctctttcacacttcaatccaaattatacatggctcaaggtattcaatttcaaatctcgcttcttctaatctt |
30963577 |
T |
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| Q |
218 |
ttaacctttatgcgttctgcttcagctcaagtttaaattt |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
30963576 |
ttaacctttatgcgttctgcttcagctcaagtttaaattt |
30963537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 30979588 - 30979349
Alignment:
| Q |
18 |
attgtaatgctccgcaaccattccctcattcctaaaacaccactctttctatcttccaatccttcattctcaatcccctttcctcgctataacaattctc |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30979588 |
attgtaatgctccgcaaccattccctcattcctcaaacaccactctttctatcttccaatccttcattctcaatcccctttcctcgctataacaattctc |
30979489 |
T |
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| Q |
118 |
ttatcctttctaccaatacacaatctctctctttcacacttcaatccaaattatccatggctcaaggtattctatttcaaatctcgcttcttctaatctt |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30979488 |
ttatcctttctaccaatacccaatctctctctttcacacttcaatccaaattatacatggctcaaggtattcaatttcaaatctcgcttcttctaatctt |
30979389 |
T |
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| Q |
218 |
ttaacctttatgcgttctgcttcagctcaagtttaaattt |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
30979388 |
ttaacctttatgcgttctgcttcagctcaagtttaaattt |
30979349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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