View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15627_high_12 (Length: 346)

Name: NF15627_high_12
Description: NF15627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15627_high_12
NF15627_high_12
[»] chr7 (1 HSPs)
chr7 (31-321)||(48965695-48965984)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 31 - 321
Target Start/End: Original strand, 48965695 - 48965984
Alignment:
Q  31 aacacaccacacatgtgatctgacctttctacattttctgattcactacatatgatgtttgcatcattgttttgttggcttttgcatttgatcattcaac 130  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||| ||||| |||||||||||    
T  48965695 aacaaaccacacatgtgatctgacctttctacattttctgattaactacatatgatgtttgctacattgttttgttggcttt-gcattggatcattcaac 48965793  T
Q  131 attgcatctgtttactaaaacaaaaatcacaaacactgataatgaatgttaattagtctaatttaagaaccagcaatagcagcaatgcctggtgctcttt 230  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48965794 attgcatctgtttactaaaaagaaaatcacaaacactaataatgaatgttaattagtataatttaagaaccagcaatagcagcaatgcctggtgctcttt 48965893  T
Q  231 cgtaagagcaacaaactgtgatgtgaggccaaatggttataattggcttccatggagctcttcttttctaaaatcatatagcaacctgatg 321  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48965894 cttaagagcaacaaactgtgatgtgaggccaaatggttataattggcttccatggagctcttcttttctaaaatcatatagcaacctgatg 48965984  T

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