View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15627_high_13 (Length: 345)
Name: NF15627_high_13
Description: NF15627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15627_high_13 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 111 - 345
Target Start/End: Original strand, 35475571 - 35475808
Alignment:
| Q |
111 |
aagtcaataatcttcttacttactctatatttatggcaatagtaatactgaatacannnnnnnnnaatacgataccaacttattatccctctcnnnnnnn |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35475571 |
aagtcaataatcttcttacttactctatatttatggcaatagtaatactgaatacatttttttttaatacgataccaacttattatccctctcaaaaaaa |
35475670 |
T |
|
| Q |
211 |
nnnnnnn---gaaacttattatcctcatcctaaaaatgtaaaaaattcctttcatgatatattcttatatttattatactgctgctgtatttgtccccct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
35475671 |
aaaaacaaaagaaacttattatcctcatcctaaaaatgtaaaaaattcctttcatgatatattcttatatttattatactactgctttatttgtccccct |
35475770 |
T |
|
| Q |
308 |
cacgttcccatatttgaactcaaaatggttgtgatgat |
345 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35475771 |
cacgttcccatatttgaactcacaatggttgtgatgat |
35475808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 35474994 - 35475029
Alignment:
| Q |
31 |
gcacatgttagatgaatttgtggtgtatgcaaaatg |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
35474994 |
gcacatgttagatgaatttgtggtgtatgcaaaatg |
35475029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 35475046 - 35475084
Alignment:
| Q |
86 |
ttagattagattatataccaccctcaagtcaataatctt |
124 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35475046 |
ttagattagattatataccactctcaagtcaataatctt |
35475084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University