View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15627_high_16 (Length: 330)
Name: NF15627_high_16
Description: NF15627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15627_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 59 - 288
Target Start/End: Original strand, 44104558 - 44104791
Alignment:
| Q |
59 |
accacattccataccactccattccatcatat----ttcatcaatacaaacaaagtcttaagagagttccgatgatcataattcaaatctcagtgaatnn |
154 |
Q |
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| T |
44104558 |
accacattccataccactccattccatcatatatatttcatcaatacaaacaaagtcttaagagagttccaatgatcataattcaaatctcagtgaataa |
44104657 |
T |
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| Q |
155 |
nnnnnntactaacatgtcaataaatattctaaagaattgtataaaaataatagtgataatagaaataaggaaaaagcaatccaaatttgtgtatgggctg |
254 |
Q |
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| T |
44104658 |
aaaatatactaacatgtcaataaatattctaaagaattgtataaaaataatagtgataatagaaataaggaaaaagcaatccaaatttgtgtatgggctg |
44104757 |
T |
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| Q |
255 |
gaccagttatgttatctcagttttacaagaataa |
288 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44104758 |
gaccagttatgttatctcagttttacaagaataa |
44104791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 44104507 - 44104540
Alignment:
| Q |
26 |
tcatcatatatcactctattccactaatttttca |
59 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44104507 |
tcatcatatatcactctattccactaatttttca |
44104540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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