View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15627_high_2 (Length: 482)
Name: NF15627_high_2
Description: NF15627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15627_high_2 |
 | |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 27 - 450
Target Start/End: Complemental strand, 1963325 - 1962905
Alignment:
| Q |
27 |
tcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatctgagctaacccaa |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || || || ||| |
|
|
| T |
1963325 |
tcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacattgtttgtccaaccatgtcagac---actcaa |
1963229 |
T |
|
| Q |
127 |
tgagatggacatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctat |
226 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1963228 |
acttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgtcattgcttctat |
1963129 |
T |
|
| Q |
227 |
aggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgat |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963128 |
aggacccttttcaatttccaggaagctattaataagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgat |
1963029 |
T |
|
| Q |
327 |
ctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttcct |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963028 |
ctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttcct |
1962929 |
T |
|
| Q |
427 |
tatccaacttgagcaaatggaagt |
450 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1962928 |
tatccaacttgagcaaatggaagt |
1962905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 27 - 450
Target Start/End: Original strand, 2015104 - 2015524
Alignment:
| Q |
27 |
tcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatctgagct--aaccc |
124 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||| | || | || | |
|
|
| T |
2015104 |
tcattaatttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgtttgtccaaccatgccagacattcaaact |
2015203 |
T |
|
| Q |
125 |
aatgagatggacatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttct |
224 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2015204 |
tattag-----catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcagtgcttct |
2015298 |
T |
|
| Q |
225 |
ataggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttg |
324 |
Q |
| |
|
|||||||| ||||| ||||| | ||| |||||||| |||| ||||||||||||||| ||||||||||||| |||||| ||| | |||||||||||||| | |
|
|
| T |
2015299 |
ataggaccgttttcgatttctatgaaactattaataagaataccatcaaaaagacgcaatttttcaacaccttggagtaagtatttgtaagattgactgg |
2015398 |
T |
|
| Q |
325 |
atctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttc |
424 |
Q |
| |
|
|||||||||||||||| |||| || |||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| ||||| ||||| |
|
|
| T |
2015399 |
atctatcttgagctagctcaaaaagatcccgaccatgaatcggaacactacctggtatttgaataggcccaggaagatctctgtactcgcatgatgtttc |
2015498 |
T |
|
| Q |
425 |
cttatccaacttgagcaaatggaagt |
450 |
Q |
| |
|
|||||| ||||||||||||| ||||| |
|
|
| T |
2015499 |
cttatctaacttgagcaaatagaagt |
2015524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 27 - 450
Target Start/End: Original strand, 2018487 - 2018907
Alignment:
| Q |
27 |
tcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatctgag-ct--aacc |
123 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| | || || |||| |
|
|
| T |
2018487 |
tcattaatttgttcttgcgaaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagtttgctgtttgtccaaccatgccagacacttcaacc |
2018586 |
T |
|
| Q |
124 |
caatgagatggacatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttc |
223 |
Q |
| |
|
|| | || |||||||||| ||| | ||| | ||||||||||| |||||||||||||| ||| | |||| |||||| || ||||| | |||||| |
|
|
| T |
2018587 |
catt---at---catcatcacccgatttggttggcgtttggataattggtccaacagcataaacatcagggttgccacttctgtcttctgtgagtgcttc |
2018680 |
T |
|
| Q |
224 |
tataggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgactt |
323 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||| |
|
|
| T |
2018681 |
tataggacctttttcaatttctaggaagctattaataagaataccatcaaaaagacggaatttttcaacacgttcaagtaagaatttgtaagattgactt |
2018780 |
T |
|
| Q |
324 |
gatctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagttt |
423 |
Q |
| |
|
||||||||||||||| |||||| || |||| |||||||||| || ||||| ||||||||||||||||||||| |||||||| |||||| |||||| |||| |
|
|
| T |
2018781 |
gatctatcttgagcttggtcaacaagatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactgacatgatgttt |
2018880 |
T |
|
| Q |
424 |
ccttatccaacttgagcaaatggaagt |
450 |
Q |
| |
|
|||||| |||||||||||||| ||||| |
|
|
| T |
2018881 |
ccttattcaacttgagcaaatagaagt |
2018907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 293
Target Start/End: Complemental strand, 2433093 - 2432951
Alignment:
| Q |
151 |
ttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaa |
250 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||| |||||||||| | |||||||||||||| ||||||| ||||| |||||||||| |||| ||||| | ||| |
|
|
| T |
2433093 |
ttgttattgtctggatgatgggtccaacaggatacacaagaggattttcacttccttcatctgtcagtgcttttataggacccctttccatttctaagaa |
2432994 |
T |
|
| Q |
251 |
gctattaattagaacaccatcaaaaagacggaatttttcaaca |
293 |
Q |
| |
|
|||||||| ||||||||||||| || |||| |||||| |||| |
|
|
| T |
2432993 |
gctattaacaagaacaccatcaacaaaacggtattttttaaca |
2432951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 136 - 449
Target Start/End: Original strand, 2008196 - 2008509
Alignment:
| Q |
136 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
235 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||| |||||||||| |||||| || |||| |||| ||| || ||| ||||||| || ||||||| | |
|
|
| T |
2008196 |
catcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagaggacccat |
2008295 |
T |
|
| Q |
236 |
ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
335 |
Q |
| |
|
|| ||||| ||||||||||||| |||||||||||| | || || || |||| || |||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
2008296 |
ctctatttctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgatctatcttga |
2008395 |
T |
|
| Q |
336 |
gctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaac |
434 |
Q |
| |
|
|||| | |||||||| |||| ||||| | || |||||||||||||||| ||||||||| | | |||||| ||||||||||| ||||||| ||||| | |
|
|
| T |
2008396 |
gctatgctcaagaaa-tccctgccatggagtggtacacaacctggtatttttataggctctagtatatctctatactcacatgatgtttcctcatccagc |
2008494 |
T |
|
| Q |
435 |
ttgagcaaatggaag |
449 |
Q |
| |
|
|| |||||| |||| |
|
|
| T |
2008495 |
ttaggcaaatagaag |
2008509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 449
Target Start/End: Original strand, 2011709 - 2012124
Alignment:
| Q |
31 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatctgagctaacccaatgag |
130 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||| |||||| | || || | | |
|
|
| T |
2011709 |
caatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacaga---cactccaaacc |
2011805 |
T |
|
| Q |
131 |
atggacatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagga |
230 |
Q |
| |
|
|| |||||||| |||| ||||| ||| ||||| ||||||||||||| ||| ||| | |||| |||||||||| ||||||| ||| | |||||| |
|
|
| T |
2011806 |
attagcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggt |
2011905 |
T |
|
| Q |
231 |
cccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctat |
330 |
Q |
| |
|
||| |||| ||||| | ||||||||||| |||||||||||| || || || ||| |||| ||| || ||| | ||||||| |||||||||||||| |
|
|
| T |
2011906 |
cccatttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatctat |
2012005 |
T |
|
| Q |
331 |
cttgagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttat |
429 |
Q |
| |
|
||||| ||| ||||||| | ||||| ||||| | || || || || |||| || ||||||||||| ||||||||||||||||||| ||||||| || |
|
|
| T |
2012006 |
cttgaactatggtcaag-agatccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctgtactcacatgttgtttcctcat |
2012104 |
T |
|
| Q |
430 |
ccaacttgagcaaatggaag |
449 |
Q |
| |
|
||||||| |||||| |||| |
|
|
| T |
2012105 |
ccaacttaggcaaatagaag |
2012124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 2004843 - 2004952
Alignment:
| Q |
163 |
ggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattag |
262 |
Q |
| |
|
|||| ||||||||||||| ||||||| || |||||||||||||||| ||| ||||||| |||||||||| | || ||||| ||||||||||||| || |
|
|
| T |
2004843 |
ggatgatgggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggacccatctccatttctaggaagctattaacaag |
2004942 |
T |
|
| Q |
263 |
aacaccatca |
272 |
Q |
| |
|
|||||||||| |
|
|
| T |
2004943 |
aacaccatca |
2004952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 136 - 432
Target Start/End: Complemental strand, 1968819 - 1968523
Alignment:
| Q |
136 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
235 |
Q |
| |
|
|||||||||| || ||||| |||||||||||| |||||||||| |||||| || |||| |||||||| || ||| ||||||| |||||| ||| | |
|
|
| T |
1968819 |
catcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttataggtcccat |
1968720 |
T |
|
| Q |
236 |
ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
335 |
Q |
| |
|
|| | ||||||||||||||||| | |||||||||| || || || || || | | |||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
1968719 |
ctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctatcttga |
1968620 |
T |
|
| Q |
336 |
gctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
432 |
Q |
| |
|
|||| | |||||| | |||| ||||| || || ||||| |||||||||| ||||||||||| | |||||| ||||||||||| ||||||| ||||| |
|
|
| T |
1968619 |
gctacgctcaagaga-tccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatcca |
1968523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 2004714 - 2004793
Alignment:
| Q |
31 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccat |
110 |
Q |
| |
|
||||||||||||| |||||||| || ||||| |||||||| |||||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
2004714 |
caatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgtttatccaaccat |
2004793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 1964985 - 1964906
Alignment:
| Q |
31 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccat |
110 |
Q |
| |
|
|||||||||| || |||||||| |||||||| || ||||| ||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
1964985 |
caatttgttcgtgtgaaagtgtaccaccactcccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccat |
1964906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 1964851 - 1964747
Alignment:
| Q |
168 |
atgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagaacac |
267 |
Q |
| |
|
||||||||||||| ||||||| | |||| |||||||||| |||||| ||||| |||||| ||| |||| ||||| | ||||||||||| ||||||| |
|
|
| T |
1964851 |
atgggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtcccatttccatttctaagaagctattaacaagaacac |
1964752 |
T |
|
| Q |
268 |
catca |
272 |
Q |
| |
|
||||| |
|
|
| T |
1964751 |
catca |
1964747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 1968921 - 1968843
Alignment:
| Q |
31 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaacca |
109 |
Q |
| |
|
|||||||||| || |||||||| |||||||| || ||||| |||||||||||||| ||||| | ||||| |||||||| |
|
|
| T |
1968921 |
caatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaacca |
1968843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 2008094 - 2008172
Alignment:
| Q |
31 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaacca |
109 |
Q |
| |
|
||||||| || || |||||||| || ||||| |||||||| ||||||||||| |||||||| | ||||| |||||||| |
|
|
| T |
2008094 |
caatttgctcctgtgaaagtgtacctccactcccaaaagatacatacaaaaccgaacaaggttgctgtttatccaacca |
2008172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 449
Target Start/End: Original strand, 2004989 - 2005129
Alignment:
| Q |
309 |
ttgtaagattgacttgatctatcttgagctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctg |
407 |
Q |
| |
|
||||||| ||||||||| |||||||||| | || ||| || | |||| ||||| || || |||||||||||||||| |||||| |||| | ||||| |
|
|
| T |
2004989 |
ttgtaagcttgacttgacctatcttgagttgggctcatgaga-tccctgccatggattggtacacaacctggtatttttataggcactggtatatctcca |
2005087 |
T |
|
| Q |
408 |
tactcacatgaagtttccttatccaacttgagcaaatggaag |
449 |
Q |
| |
|
||||||||||| ||||| | ||||||||| |||||| |||| |
|
|
| T |
2005088 |
tactcacatgatgtttcttcatccaacttaggcaaatagaag |
2005129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 27 - 450
Target Start/End: Complemental strand, 5902498 - 5902084
Alignment:
| Q |
27 |
tcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatctgagctaacccaa |
126 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| | |||||| || || || | | |
|
|
| T |
5902498 |
tcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggttgttgtttatgtaaccatgtcagac---actcca |
5902402 |
T |
|
| Q |
127 |
tgagatggacatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctat |
226 |
Q |
| |
|
| ||| || ||||||| |||| |||||||||||||||||||| || |||||| | |||| |||||||||| ||||||| ||||||||| |
|
|
| T |
5902401 |
tac------cattattaccagattctgttcttgtttggataatgggtccaatagggtacacagcagggttaccacttccttcttctgtcagtgcttctat |
5902308 |
T |
|
| Q |
227 |
aggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgat |
326 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || | ||||||| | || |||| ||| || || |||||| ||||| ||||||||||| || ||| |
|
|
| T |
5902307 |
aggacctttttcaatttccaggaagctattaataagtatgccatcaacagaacagaatcttttaatacgttggagtaagaatttgtaagattggctcgat |
5902208 |
T |
|
| Q |
327 |
ctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttcct |
426 |
Q |
| |
|
|||||||||||| || ||| | |||||||||| |||| || |||||||||||| ||||||||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
5902207 |
ctatcttgagcttgggcaacgagatcccgaccacgaattggtacacaacctggtgcttgaataggttctggcagatctctgtactcacatgatgtttcct |
5902108 |
T |
|
| Q |
427 |
tatccaacttgagcaaatggaagt |
450 |
Q |
| |
|
||||||| |||||||||| ||||| |
|
|
| T |
5902107 |
tatccaatttgagcaaatagaagt |
5902084 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 5905982 - 5905918
Alignment:
| Q |
27 |
tcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaagg |
91 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
5905982 |
tcatcagtttgttcttgtgaaagtgcaccaccgcttccaaaagaaacatacaaaactgaacaagg |
5905918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 22096 - 22055
Alignment:
| Q |
45 |
gaaagtgtgccaccactaccaaaagaaacatacaaaactgaa |
86 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
22096 |
gaaagtgttccaccacttccaaaagaaacatacaaaactgaa |
22055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 2842 - 2805
Alignment:
| Q |
45 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
82 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
2842 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
2805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 57385 - 57348
Alignment:
| Q |
45 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
82 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
57385 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
57348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 15459 - 15496
Alignment:
| Q |
45 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
82 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
15459 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
15496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 18189931 - 18189870
Alignment:
| Q |
388 |
taggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag |
449 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||||| ||||||||| |||||| |||| |
|
|
| T |
18189931 |
taggctctggtagatttctgtactcacatgttgtttcctcatccaacttaggcaaatagaag |
18189870 |
T |
|
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