View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15627_high_24 (Length: 317)
Name: NF15627_high_24
Description: NF15627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15627_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 44575558 - 44575294
Alignment:
| Q |
23 |
catcatcaactcttgtttttgacaaattcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaag |
122 |
Q |
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| T |
44575558 |
catcatcaactcttgtttttgacaaattcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaag |
44575459 |
T |
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| Q |
123 |
agaacattttgaagtgttgagttcttaaccaataattgccagagaaatggagatactttatttttaagttaggacatacaacaaaatccatcaaagaaat |
222 |
Q |
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| T |
44575458 |
agaacattttgaagtgttgagttcttaaccaataattgccagacaaatggagatactttatttttaagttaggacatacaacaaaatccatcaaagaaat |
44575359 |
T |
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| Q |
223 |
agaattattattggtttgtgttaattgcaagaagcaatgatagctcatgagggtgaggtttgggg |
287 |
Q |
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| T |
44575358 |
agaattattattggtttgtgttaattgcaagaagcaatgatagctcatgagggtgaggtttgggg |
44575294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 32785711 - 32785575
Alignment:
| Q |
46 |
aaattcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaagagaacattttgaagtgttgagtt |
145 |
Q |
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| T |
32785711 |
aaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattggaaaaaatagaagaaaacatcctgatgctttcatct |
32785612 |
T |
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| Q |
146 |
cttaaccaataattgccagagaaatggagatacttta |
182 |
Q |
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| T |
32785611 |
cttaaccaataattgcgagccaaatggagaaacttta |
32785575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 1037597 - 1037524
Alignment:
| Q |
49 |
ttcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaag |
122 |
Q |
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| T |
1037597 |
ttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaag |
1037524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 12121371 - 12121317
Alignment:
| Q |
68 |
gatatgtaatagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaag |
122 |
Q |
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| T |
12121371 |
gatatgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaacggaag |
12121317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 55908661 - 55908588
Alignment:
| Q |
49 |
ttcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaag |
122 |
Q |
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| T |
55908661 |
ttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaag |
55908588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 18315171 - 18315121
Alignment:
| Q |
84 |
agctcaaatcaagtaattgcaaattgggaaaaatggaagagaacattttga |
134 |
Q |
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| T |
18315171 |
agctcaaatcaagcaactgcaaattggggaaaatggaagaaaatattttga |
18315121 |
T |
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