View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15627_high_26 (Length: 307)
Name: NF15627_high_26
Description: NF15627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15627_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 31788511 - 31788613
Alignment:
| Q |
79 |
tgggtttccatattcatcaaccctacgtgtttgatcaccataaccttgttgatattgagacattgttataatttcttcttcacaaacaaaaaataacgtg |
178 |
Q |
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| T |
31788511 |
tgggtttccatattcatcaaccctacgtgtttgatcaccataaccttgttgatattgagacattgttataa-ttcttcttcacaaacaaaaaataacgtg |
31788609 |
T |
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| Q |
179 |
aagt |
182 |
Q |
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|||| |
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| T |
31788610 |
aagt |
31788613 |
T |
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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 31788431 - 31788381
Alignment:
| Q |
16 |
atggacatcatcaacaacatcatggagttggagttgatcaaaccacaggtt |
66 |
Q |
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| T |
31788431 |
atggacatcatcaacaacatcatggagttggagttgatcaaaccacaggtt |
31788381 |
T |
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