View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15627_high_5 (Length: 406)
Name: NF15627_high_5
Description: NF15627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15627_high_5 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 23 - 376
Target Start/End: Original strand, 30264423 - 30264777
Alignment:
| Q |
23 |
catcatcaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttgg |
122 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264423 |
catcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttgg |
30264522 |
T |
|
| Q |
123 |
tgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaacgatct |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30264523 |
tgtcctttctattaatatctttgacacatagtcatcaaaatcttgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatct |
30264622 |
T |
|
| Q |
223 |
tttggattaacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcacatgcacatgttaatatttgttatat |
322 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30264623 |
tttggatttacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcatatgcacatgttaatatttgttatat |
30264722 |
T |
|
| Q |
323 |
gatagatatgtaaggaaatataaacactaaaacacat-aaaaagtacgtactatt |
376 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
30264723 |
gataaatatgtaaggaaatataaacactaaaacacataaaaaagtacgtactatt |
30264777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 23 - 376
Target Start/End: Complemental strand, 30287765 - 30287411
Alignment:
| Q |
23 |
catcatcaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttgg |
122 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287765 |
catcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttgg |
30287666 |
T |
|
| Q |
123 |
tgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaacgatct |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30287665 |
tgtcctttctattaatatctttgacacatagtcatcaaaatcttgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgatct |
30287566 |
T |
|
| Q |
223 |
tttggattaacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcacatgcacatgttaatatttgttatat |
322 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
30287565 |
tttggatttacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcatatgcacatgttaatatttgttatat |
30287466 |
T |
|
| Q |
323 |
gatagatatgtaaggaaatataaacactaaaacacata-aaaagtacgtactatt |
376 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
30287465 |
gataaatatgtaaggaaatataaacactaaaacacataaaaaagtacgtactatt |
30287411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 66 - 282
Target Start/End: Original strand, 30271360 - 30271576
Alignment:
| Q |
66 |
agcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatca |
165 |
Q |
| |
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|||||| ||||||||||| || || | ||||||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |
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|
| T |
30271360 |
agcatttcttgttggatatttaattaaatgtatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatat |
30271459 |
T |
|
| Q |
166 |
tgatcatagaattcaattgactcatttttagggaacactggaaccttaaaacgatcttttggattaacctctacttttttccatttcatatttccatctt |
265 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||| | |||||| | | | |||||| || || |||||||| |||||||||||||| || ||||||| |
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| T |
30271460 |
tgatcatacaattcaattgattcacttttagggaatattggaacgtgcatatgatcttcaggcttcacctctacctttttccatttcattttgccatctt |
30271559 |
T |
|
| Q |
266 |
tatctctcacctatata |
282 |
Q |
| |
|
| ||||||||||||||| |
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|
| T |
30271560 |
tgtctctcacctatata |
30271576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 66 - 282
Target Start/End: Complemental strand, 30280829 - 30280613
Alignment:
| Q |
66 |
agcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatca |
165 |
Q |
| |
|
|||||||||||||||||| || || | ||| ||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |
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| T |
30280829 |
agcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatat |
30280730 |
T |
|
| Q |
166 |
tgatcatagaattcaattgactcatttttagggaacactggaaccttaaaacgatcttttggattaacctctacttttttccatttcatatttccatctt |
265 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||| | ||||||||| | | |||||| || || |||||| ||||||||| |||| || ||||||| |
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|
| T |
30280729 |
tgatcatacaattcaattgattcacttttagggaatattggaaccttcatatgatcttcaggcttcgcctctatttttttccacatcattttgccatctt |
30280630 |
T |
|
| Q |
266 |
tatctctcacctatata |
282 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30280629 |
gatctctcacctatata |
30280613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 66 - 282
Target Start/End: Original strand, 30304427 - 30304643
Alignment:
| Q |
66 |
agcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatca |
165 |
Q |
| |
|
|||||||||||||||||| || || | ||| ||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |
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|
| T |
30304427 |
agcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatat |
30304526 |
T |
|
| Q |
166 |
tgatcatagaattcaattgactcatttttagggaacactggaaccttaaaacgatcttttggattaacctctacttttttccatttcatatttccatctt |
265 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||| | ||||||||| | | |||||| || || |||||| ||||||||| |||| || ||||||| |
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|
| T |
30304527 |
tgatcatacaattcaattgattcacttttagggaatattggaaccttcatatgatcttcaggcttcgcctctatttttttccacatcattttgccatctt |
30304626 |
T |
|
| Q |
266 |
tatctctcacctatata |
282 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30304627 |
gatctctcacctatata |
30304643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 30048621 - 30048723
Alignment:
| Q |
23 |
catcatcaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttgg |
122 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| |||| ||| |
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|
| T |
30048621 |
catcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgtgg |
30048720 |
T |
|
| Q |
123 |
tgt |
125 |
Q |
| |
|
||| |
|
|
| T |
30048721 |
tgt |
30048723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 30062962 - 30063064
Alignment:
| Q |
23 |
catcatcaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttgg |
122 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| |||| ||| |
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|
| T |
30062962 |
catcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgtgg |
30063061 |
T |
|
| Q |
123 |
tgt |
125 |
Q |
| |
|
||| |
|
|
| T |
30063062 |
tgt |
30063064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 30032381 - 30032483
Alignment:
| Q |
29 |
caagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcct |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||| |||||||||| ||||||| ||| ||||||||||| ||||| |||| |||||| || |
|
|
| T |
30032381 |
caagtgcatgatgaagtttgaatattatggtgcaagcttcattggttgttggataattgataatatgaatttcccaaagtggtttatcttgtggtgttct |
30032480 |
T |
|
| Q |
129 |
ttc |
131 |
Q |
| |
|
||| |
|
|
| T |
30032481 |
ttc |
30032483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 30228760 - 30228850
Alignment:
| Q |
23 |
catcatcaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggttt |
113 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||| ||| ||||||||||| ||||| |
|
|
| T |
30228760 |
catcaccaagtgcatgattaagtttgaatattatggtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggttt |
30228850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 30220261 - 30220209
Alignment:
| Q |
66 |
agcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtctt |
118 |
Q |
| |
|
|||||||||||||||||| || || | ||| ||||||||||||||||| |||| |
|
|
| T |
30220261 |
agcattgcttgttggatatttaatcaaatgaatttcccaaaggggtttatctt |
30220209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 79601 - 79679
Alignment:
| Q |
29 |
caagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaag |
107 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||| ||||| |||||||||| || |||| |||||| |||||||| |
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|
| T |
79601 |
caagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatatgtatctcccaaag |
79679 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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