View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15627_high_6 (Length: 393)
Name: NF15627_high_6
Description: NF15627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15627_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 29 - 367
Target Start/End: Complemental strand, 32244628 - 32244293
Alignment:
| Q |
29 |
aatttctactttaattactccatacatctatatatttgagtctgagcaacactgttatggcttaatgaaaactgtaaatgaataaagtagagtgaaaaag |
128 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |
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| T |
32244628 |
aatttctactttaatcactacatacatctatatatttgagtctgagcaacactgttactgcttaatgaaaactgtaaatgaattaagtaaagtgaaaaag |
32244529 |
T |
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| Q |
129 |
aagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattcc |
228 |
Q |
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| T |
32244528 |
aagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattcc |
32244429 |
T |
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| Q |
229 |
atatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32244428 |
atatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacat--atatcttaatgtgatgtgtaggaaattaagaattcataggcatgcatg |
32244331 |
T |
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| Q |
329 |
ctgaagaatgtcatgaactcagcaacctacactgtgtga |
367 |
Q |
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| T |
32244330 |
gtgaagaatgtcatgaact-agcaacctacactgtgtga |
32244293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 29 - 367
Target Start/End: Complemental strand, 32250337 - 32250002
Alignment:
| Q |
29 |
aatttctactttaattactccatacatctatatatttgagtctgagcaacactgttatggcttaatgaaaactgtaaatgaataaagtagagtgaaaaag |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250337 |
aatttctactttaattactccatacatctatatatttgagtctgagcaacactgttacggcttaatgaaaactgtaaatgaataaagtagagtgaaaaag |
32250238 |
T |
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| Q |
129 |
aagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattcc |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
32250237 |
aagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatatatttgttctcattcatttaactgcagtcaggattcc |
32250138 |
T |
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| Q |
229 |
atatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatg |
328 |
Q |
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|||||| |||||| |||||||||||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32250137 |
atatgtgaagatagcaacaaatataccctctgtgatgtctc--tgcacatatctatcataatgtgatgtgtaggaaattaagaattcataggcatgcatg |
32250040 |
T |
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| Q |
329 |
ctgaagaatgtcatgaactcagcaacctacactgtgtga |
367 |
Q |
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| T |
32250039 |
gtgaagaatgtcatgaact-agcaacctacactgtgtga |
32250002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 277 - 367
Target Start/End: Complemental strand, 32254912 - 32254822
Alignment:
| Q |
277 |
atatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtga |
367 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
32254912 |
atatatataataatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaacttagcaacctacactgtgtga |
32254822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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