View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15627_high_9 (Length: 364)
Name: NF15627_high_9
Description: NF15627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15627_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 6 - 340
Target Start/End: Complemental strand, 13447396 - 13447062
Alignment:
| Q |
6 |
tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacggctgtagtaacagaggtg |
105 |
Q |
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| T |
13447396 |
tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttcgttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg |
13447297 |
T |
|
| Q |
106 |
ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacacggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgaga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13447296 |
ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatattgaga |
13447197 |
T |
|
| Q |
206 |
attactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13447196 |
attactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt |
13447097 |
T |
|
| Q |
306 |
tgtgattcgcattcctgatagcttacctcttgatg |
340 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
13447096 |
tgtgattcgcattcctgatagcttacctcttgatg |
13447062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 13419833 - 13419511
Alignment:
| Q |
18 |
aagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacggctgtagtaacagaggtgggaagcaaagta |
117 |
Q |
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|||||| |||||| ||||||||| |||||||| |||||| | || |||||||| ||||| |||||| ||| | ||||||| ||||| |||||||||||| |
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| T |
13419833 |
aagaaatgagtagtaaataattgttcaatttgtttataatttatttaataaatgcaggcatgaacttgcgggtatagtaaccgaggttggaagcaaagta |
13419734 |
T |
|
| Q |
118 |
aaaaagtttaaagttggagacaaagtaggggtgggatacacggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcacca |
217 |
Q |
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| T |
13419733 |
gaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaa |
13419634 |
T |
|
| Q |
218 |
aatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcat |
317 |
Q |
| |
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|| ||| |||| || |||| ||||| |||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13419633 |
catttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcat |
13419534 |
T |
|
| Q |
318 |
tcctgatagcttacctcttgatg |
340 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
13419533 |
tcctgatagcttacctcttgatg |
13419511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 73 - 340
Target Start/End: Complemental strand, 13426669 - 13426402
Alignment:
| Q |
73 |
aggcacgaacttacggctgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacacggttgattcatgtc |
172 |
Q |
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||||| |||||| ||| | | ||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
13426669 |
aggcatgaacttgcgggtattgtaacagaggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtc |
13426570 |
T |
|
| Q |
173 |
gttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggagg |
272 |
Q |
| |
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|||| || ||||||||||| || ||| |||||||||||||| || || | || |||| || ||||| ||||| ||||| |||| |||||||| |
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| T |
13426569 |
gttcatgcgaaaattgtgcggaagatcttgagaattactgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggagg |
13426470 |
T |
|
| Q |
273 |
tttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatg |
340 |
Q |
| |
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|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13426469 |
ttattccgactcaatggttgcagatgagcactttgtgattcgcattcctgatagcttacctcttgatg |
13426402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 61 - 338
Target Start/End: Complemental strand, 13413445 - 13413168
Alignment:
| Q |
61 |
tgtaataaatataggcacgaacttacggctgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacacgg |
160 |
Q |
| |
|
||||||||||| ||||| || ||| ||| | |||||||||| || ||||||||||| | |||||||||||||||||||||||||| || || ||| | |
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| T |
13413445 |
tgtaataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttga |
13413346 |
T |
|
| Q |
161 |
ttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactat |
260 |
Q |
| |
|
||||||||||||| || || || ||||| ||| || |||||||||||||| |||||| | |||| || |||| ||||| ||| || | |
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| T |
13413345 |
ttgattcatgtcgatcatgccaagattgtaatgacaatcttgagaattactgccccaaatttgtagtcacatgtggtgccaagtatcgtgatggaaccgt |
13413246 |
T |
|
| Q |
261 |
cacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttga |
338 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
13413245 |
cacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgacaacatacctcttga |
13413168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 13388988 - 13389108
Alignment:
| Q |
92 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacacggttgattcatgtcgttcttgtgaaaattgtgc |
191 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| || ||||||||||||||||| || || |||| ||||||||||||||| || ||| ||||||||| |
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| T |
13388988 |
tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgt |
13389087 |
T |
|
| Q |
192 |
cgacgatattgagaattactg |
212 |
Q |
| |
|
||| || |||| |||||||| |
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| T |
13389088 |
tgacaatcttgaaaattactg |
13389108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 13385167 - 13385288
Alignment:
| Q |
92 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacacggttgattcatgtcgttcttgtgaaaattgtgc |
191 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| || ||||||||||||||||| || || |||| ||||||||||||| || ||| ||||||||| |
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| T |
13385167 |
tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgt |
13385266 |
T |
|
| Q |
192 |
cgacgatattgagaattactgc |
213 |
Q |
| |
|
||| || |||| ||||||||| |
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|
| T |
13385267 |
tgacaatcttgaaaattactgc |
13385288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 13454263 - 13454143
Alignment:
| Q |
92 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacacggttgattcatgtcgttcttgtgaaaattgtgc |
191 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||| ||||||||||||| |||||| ||||||| | ||||||||| |||| || ||| ||||||||| |
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| T |
13454263 |
tagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgt |
13454164 |
T |
|
| Q |
192 |
cgacgatattgagaattactg |
212 |
Q |
| |
|
|| || ||||||||||||| |
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| T |
13454163 |
tgataatcttgagaattactg |
13454143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 340
Target Start/End: Complemental strand, 13454089 - 13454015
Alignment:
| Q |
266 |
atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatg |
340 |
Q |
| |
|
||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||| ||| ||||||||||||| |
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| T |
13454089 |
atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacctcttgatg |
13454015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 13393562 - 13393641
Alignment:
| Q |
259 |
atcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttga |
338 |
Q |
| |
|
||||| |||||||| | ||| ||||||||||||||||| ||||||||| | ||| |||||||||| ||||||| ||||| |
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| T |
13393562 |
atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatggcttaccacttga |
13393641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 320
Target Start/End: Complemental strand, 47601427 - 47601353
Alignment:
| Q |
246 |
tcgtggtggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc |
320 |
Q |
| |
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||||| |||||| | ||| || ||||||| ||| ||||||||||||| |||||||||||||||| ||| |||||| |
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| T |
47601427 |
tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc |
47601353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 47601570 - 47601530
Alignment:
| Q |
103 |
gtgggaagcaaagtaaaaaagtttaaagttggagacaaagt |
143 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
47601570 |
gtgggaagcaaagtagaaaagttcaaagttggagacaaagt |
47601530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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