View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15627_low_1 (Length: 234)
Name: NF15627_low_1
Description: NF15627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15627_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34291748 - 34291529
Alignment:
| Q |
1 |
attttgaggtatcaagttcaattcctactctttnnnnnnngtaagtaaataaggatagggatgttacttattgcagcctgagaaattaacatatttgtcg |
100 |
Q |
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| T |
34291748 |
attttgaggtatcaagttcaattcctactctttaaaaaaagtaagtaaataaggatagggatgttacttattgcagcctgagaaattaacatatttgtcg |
34291649 |
T |
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| Q |
101 |
caagttcctctccatttggcgggtggaggaccgagtccatcgtccttgaagctttgaaactcaggagtgatccctacatcatgccaataaggaaacaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34291648 |
caagttcctctccatttggcgggtggaggaccgagtccatcgtccttgaagcttcgaaactcaggagtgatccctacatcacgccaataaggaaacaaag |
34291549 |
T |
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| Q |
201 |
tggtttgcaaacaaaccatg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
34291548 |
tggtttgcaaacaaaccatg |
34291529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 12728482 - 12728610
Alignment:
| Q |
49 |
ataaggatagggatgttacttattgcagcctgagaaattaacatatttgtcgcaagttcctctccatttggcgggtggaggaccgagtccatcgtccttg |
148 |
Q |
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| T |
12728482 |
ataaggatagggatgttacttattgcagcctgagaaattaacatatttgtcacaagttcctttccatttagcaggtggaggaccaaatccgtcatccttg |
12728581 |
T |
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| Q |
149 |
aagctttgaaactcaggagtgatccctac |
177 |
Q |
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| T |
12728582 |
aagctttgaaactcaggagttatccctac |
12728610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 28519485 - 28519373
Alignment:
| Q |
64 |
ttacttattgcagcctgagaaattaacatatttgtcgcaagttcctctccatttggcgggtggaggaccgagtccatcgtccttgaagctttgaaactca |
163 |
Q |
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||||||||||||||||||||||||| |||| | | ||||||||| ||||||| || ||||||||||| | ||||| ||||||||||||| |||| |
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| T |
28519485 |
ttacttattgcagcctgagaaattagcatagtgtttacaagttcctttccattttgctggtggaggacctaaaccatcatccttgaagcttttcgactcg |
28519386 |
T |
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| Q |
164 |
ggagtgatcccta |
176 |
Q |
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|| |||||||||| |
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| T |
28519385 |
ggcgtgatcccta |
28519373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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