View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15628_high_1 (Length: 324)
Name: NF15628_high_1
Description: NF15628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15628_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 306
Target Start/End: Original strand, 39073531 - 39073822
Alignment:
| Q |
15 |
gagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacagcttctatgcttgatgaagccattcgttatgttaagtttttgaaga |
114 |
Q |
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| T |
39073531 |
gagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacagcttctatgcttgatgaagccattcgttatgttaagtttttgaaga |
39073630 |
T |
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| Q |
115 |
gacaaatcaagttgcttcaatccactcctcaaaatcaacaacaacaacacattcaattgccactttcatcacaatgcattaattctacaactcctagtgc |
214 |
Q |
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| T |
39073631 |
gacaaatcaagttgcttcaatccactcctcaaaatcaacaacaacaacacattcaattgccactttcatcacaatgcattaattctacaactcctagtgc |
39073730 |
T |
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| Q |
215 |
tttgttattgtccccttcttccggttgtgacgtctggccttttgcaccaaatttactactcacttccacaacagctgccacagtggacttac |
306 |
Q |
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| T |
39073731 |
tttgttattgtccccttcttccggttgtgacgtttggccttttgcaccaaatttactactcacttccacaacagctgccacagtggacttac |
39073822 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 6259655 - 6259729
Alignment:
| Q |
45 |
cctggtggaactaaaatggatacagcttctatgcttgatgaagccattcgttatgttaagtttttgaagagacaa |
119 |
Q |
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| T |
6259655 |
cctggtggaacaaaaatggacactgcttctatgttagatgaagcaatacattatgtgaagtttttgaagaaacaa |
6259729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 46899384 - 46899443
Alignment:
| Q |
48 |
ggtggaactaaaatggatacagcttctatgcttgatgaagccattcgttatgttaagttt |
107 |
Q |
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| T |
46899384 |
ggtggaactaaaatggatactgcatcaatgttggatgaagctattcattatgttaagttt |
46899443 |
T |
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