View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15628_low_2 (Length: 218)
Name: NF15628_low_2
Description: NF15628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15628_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 5491312 - 5491127
Alignment:
| Q |
15 |
gagaggtatgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggtacaagaacatatcgccaaggactattgtgtgggttg |
114 |
Q |
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| T |
5491312 |
gagaggtatgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggtacaagaacatatcaccaaggactattgtgtgggttg |
5491213 |
T |
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| Q |
115 |
ccaatagaaatactcctacacaaaactcaacagcaatgctgaaagtcaatgatcaaggaagtcttgttattcttgatggctccaaa |
200 |
Q |
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| T |
5491212 |
ccaatagaaatactcctacacaaaactcaacagcaatgctgaaagtcaatgatcaaggaagtcttgttattcttgatggctccaaa |
5491127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 5801461 - 5801641
Alignment:
| Q |
20 |
gtatgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggtacaagaacatatcgccaaggactattgtgtgggttgccaat |
119 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
5801461 |
gtatgaagccggatttttcaactttggcgattcccaacgccaatacttcggtatatggtacaagaagatatcaccaaggactattgtgtgggttgccaat |
5801560 |
T |
|
| Q |
120 |
agaaatactcctacacaaaactcaacagcaatgctgaaagtcaatgatcaaggaagtcttgttattcttgatggctccaaa |
200 |
Q |
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|||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5801561 |
agaaatactcctgtacataactcagcagcaatgctgaaactcaatgatcaaggaagtcttgttattcttgatggctccaaa |
5801641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 5853160 - 5853345
Alignment:
| Q |
15 |
gagaggtatgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggtacaagaacatatcgccaaggactattgtgtgggttg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
5853160 |
gagaggtatgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggtacaagaatatatcaccaagcactattgtgtgggttg |
5853259 |
T |
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| Q |
115 |
ccaatagaaatactcctacacaaaactcaacagcaatgctgaaagtcaatgatcaaggaagtcttgttattcttgatggctccaaa |
200 |
Q |
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||||||||||||||||| |||||||||||| |||||| ||||| | | |||||||||||||||||||||| |||||||||||||| |
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| T |
5853260 |
ccaatagaaatactcctgtacaaaactcaactgcaatgatgaaacttactgatcaaggaagtcttgttattattgatggctccaaa |
5853345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 5504102 - 5503922
Alignment:
| Q |
20 |
gtatgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggtacaagaacatatcgccaaggactattgtgtgggttgccaat |
119 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5504102 |
gtatgaagcaggatttttcaactttggtgattcacaacgccaatacttcggtatatggtacaagaacatatcgccaaggactattgtgtgggttgccaat |
5504003 |
T |
|
| Q |
120 |
agaaatactcctacacaaaactcaacagcaatgctgaaagtcaatgatcaaggaagtcttgttattcttgatggctccaaa |
200 |
Q |
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|||||||| || ||||||||||||||||||||| ||||| | || |||||||||||||||||||| | |||||||||||| |
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| T |
5504002 |
agaaataccccgacacaaaactcaacagcaatgttgaaacttaacgatcaaggaagtcttgttatcgtggatggctccaaa |
5503922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 5827120 - 5827300
Alignment:
| Q |
20 |
gtatgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggtacaagaacatatcgccaaggactattgtgtgggttgccaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
5827120 |
gtatgaagcaggatttttcaactttggcgattcacagcgtcaatacttcggtatatggtacaagaacatatcaccaaggactattgtgtgggttgctaat |
5827219 |
T |
|
| Q |
120 |
agaaatactcctacacaaaactcaacagcaatgctgaaagtcaatgatcaaggaagtcttgttattcttgatggctccaaa |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| |
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| T |
5827220 |
cgaaatactcctgtacaaaactcaacagcaatgctgaaacttaacaatcaaggaagtcttgttattcttgatggctccaaa |
5827300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 5485888 - 5485709
Alignment:
| Q |
18 |
aggtatgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggtacaagaacatatcgccaaggactattgtgtgggttgcca |
117 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| |
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| T |
5485888 |
aggtttgaagcaggatttttcaactttggcgattcacaacatcaatacttcggtatatggtacaagaatatatcaccaaggactattgtatgggttgcca |
5485789 |
T |
|
| Q |
118 |
atagaaatactcctacacaaaactcaacagcaatgctgaaagtcaatgatcaaggaagtcttgttattcttgatggctcc |
197 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||| | || ||||||||||||||| ||||||||||||||||| |
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| T |
5485788 |
atagaaatactcctgcacaaaactcaacagcaatgctgaaacttaacgatcaaggaagtcttattattcttgatggctcc |
5485709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 5456118 - 5455941
Alignment:
| Q |
23 |
tgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggtacaagaacatatcgccaaggactattgtgtgggttgccaataga |
122 |
Q |
| |
|
||||||||| |||||||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
5456118 |
tgaagcaggttttttcaattttggagatccacaacgccaatactttggtatatggtacaagaacatatcaccaaggacaattgtgtgggttgccaataga |
5456019 |
T |
|
| Q |
123 |
aatactcctacacaaaactcaacagcaatgctgaaagtcaatgatcaaggaagtcttgttattcttgatggctccaaa |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
5456018 |
aatactcctgtacaaaactcaacagcaatgctgaaactcaatgatcagggaagtcttgttattcttgatggctccaaa |
5455941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 5847856 - 5848038
Alignment:
| Q |
18 |
aggtatgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggtacaagaacatatcgccaaggactattgtgtgggttgcca |
117 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5847856 |
aggtttgaagcaggatttttctactttggagatccacaacgccaatacttcggtatatggtacaagaacatatcaccaaggactattgtgtgggttgcca |
5847955 |
T |
|
| Q |
118 |
atagaaatactcctacacaaaactcaacagcaatgctgaaagtcaatgatcaaggaagtcttgttattcttgatggctccaaa |
200 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||||||| |
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|
| T |
5847956 |
atagaaatactcctgtacgtaactcaacagcaatgctgaaactcaacgaccaaggaaatcttgttattcttgatggctccaaa |
5848038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 5526945 - 5526765
Alignment:
| Q |
20 |
gtatgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggtacaagaacatatcgccaaggactattgtgtgggttgccaat |
119 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5526945 |
gtatgaagcaggttttttcaactttggagatccacaacatcaatacttcggtatatggtacaagaacatatcgccaaggactattgtgtgggttgccaat |
5526846 |
T |
|
| Q |
120 |
agaaatactcctacacaaaactcaacagcaatgctgaaagtcaatgatcaaggaagtcttgttattcttgatggctccaaa |
200 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| ||||| | || |||||||||||||||| |||| | |||||||||||| |
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|
| T |
5526845 |
agaaataccccgacacaaaactcaacagcaatgttgaaacttaacgatcaaggaagtcttgatattgtggatggctccaaa |
5526765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 20344729 - 20344552
Alignment:
| Q |
23 |
tgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggtacaagaacatatcgccaaggactattgtgtgggttgccaataga |
122 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20344729 |
tgaagcaggatttttcaactttagagatccactacgccaatacttcggtatatggtacaagaacatatcaccaaggactattgtgtgggttgccaataga |
20344630 |
T |
|
| Q |
123 |
aatactcctacacaaaactcaacagcaatgctgaaagtcaatgatcaaggaagtcttgttattcttgatggctccaaa |
200 |
Q |
| |
|
||||| ||| ||||||||||||||| ||||||||| |||||| ||| |||| |||||||||| |||||||||||||| |
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|
| T |
20344629 |
aatacgcctgtacaaaactcaacagcgatgctgaaactcaatggtcagggaactcttgttattgttgatggctccaaa |
20344552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 5447556 - 5447379
Alignment:
| Q |
23 |
tgaagcaggatttttcaactttggcgattcacaacgccaatacttcggtatatggtacaagaacatatcgccaaggactattgtgtgggttgccaataga |
122 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||||| || | ||| | || |||||| |||||||||||||||||||| |
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| T |
5447556 |
tgaagcaggatttttcaattttggagatccacaacgccaatactttggtatatggtataacagcattttacctaggactgttgtgtgggttgccaataga |
5447457 |
T |
|
| Q |
123 |
aatactcctacacaaaactcaacagcaatgctgaaagtcaatgatcaaggaagtcttgttattcttgatggctccaaa |
200 |
Q |
| |
|
|| || ||| ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
5447456 |
aacacccctgtacaaaactcaacagcaatgctgaaactcactgatcagggaagtcttgttattcttgatggctccaaa |
5447379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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